Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24590 320 / 6e-110 PLSP1 plastidic type i signal peptidase 1 (.1) AT1G06870 220 / 8e-70 Plsp2A plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) AT2G30440 218 / 3e-69 Plsp2B, TPP plastidic type I signal peptidase 2B, thylakoid processing peptide (.1) AT1G23465 63 / 4e-12 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G29960 62 / 1e-11 AGL64 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G53530 59 / 2e-10 Peptidase S24/S26A/S26B/S26C family protein (.1.2) AT3G08980 51 / 7e-08 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034925 [exp] 521 / 0 AT3G24590 316 / 1e-108 plastidic type i signal peptidase 1 (.1) Lus10032753 [exp] 234 / 3e-71 AT1G06870 379 / 3e-125 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10011671 [exp] 142 / 2e-42 AT2G30440 172 / 7e-54 plastidic type I signal peptidase 2B, thylakoid processing peptide (.1) Lus10013703 [exp] 57 / 4e-09 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10005571 [exp] 56 / 4e-09 AT1G53530 213 / 1e-71 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10002492 [exp] 55 / 5e-09 AT3G08980 191 / 5e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10004822 [exp] 50 / 2e-07 AT3G08980 190 / 9e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10025393 [exp] 50 / 3e-07 AT1G53530 169 / 3e-54 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157900 [exp] 338 / 9e-117 AT3G24590 357 / 5e-124 plastidic type i signal peptidase 1 (.1) Potri.018G081800 [exp] 332 / 3e-114 AT3G24590 372 / 3e-130 plastidic type i signal peptidase 1 (.1) Potri.014G036400 [exp] 235 / 2e-75 AT1G06870 377 / 8e-130 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.002G079600 [exp] 170 / 2e-52 AT3G24590 177 / 3e-55 plastidic type i signal peptidase 1 (.1) Potri.001G380400 [exp] 61 / 2e-11 AT1G53530 227 / 3e-77 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.005G092900 [exp] 59 / 2e-10 AT1G53530 189 / 5e-62 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.016G115100 [exp] 54 / 8e-09 AT3G08980 204 / 3e-68 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.007G071400 [exp] 53 / 2e-08 AT1G53530 194 / 7e-64 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0299 [flax] [poplar] Peptidase_SF PF10502 [flax] [poplar] Peptidase_S26 Signal peptidase, peptidase S26
Representative CDS sequence Show only first row Show all	>Lus10023651 pacid=23148385 polypeptide=Lus10023651 locus=Lus10023651.g ID=Lus10023651.BGIv1.0 annot-version=v1.0 ATGATATCTCCATCACAGATTCCAAATTTCCAGTCCACTTCCCTCTTCTCTAAACCCTTACTAATCCCCCATTCCCACTCCTTTCCTCGCTTCTCGATCT CGCTTTCGAATCCCACCCACGACATCAAGTTTACCGTTAAAGATGGCAGCCTACGTCAAAAAAAGTCAACGGTGGTGGTGGCCGGAGCTAGCAACAGCGA CGACGGCGGTGGAGGTGGTGACGATGGAGGCGACGGCGAGCTGGAGAAAAGGAGCGGAGTTTTACCGGAGTGGTTGAACTTCTCTCTAGACGATGCGAAG ACTGTTGTCGCTGCTTTGGCGATTTCGCTTGCTTTCAGGAACTTCATTGCCGAACCGAGATACATTCCTTCTCTGTCCATGTATCCGACTTTCGATGTCG GCGATAGACTTGTTGCCGAGAAGGTCACGTACTACTTCAGAGAGCCTTGTACAAATGATATAGTGATATTTAAGAGTCCTCCAGTCCTGCAGAAAGCTGG ATACACCGATGATGATGTTTTCATCAAACGGATCGTTGCCAAAGAAGGTGATACTGTCGAGGTCCGTAATGGGAAGCTTGTAGTAAACGGAGTCGAGAGA GATGAAAAGTTCATCAATGAAAAGCCATCTTATAACATGAAACCTACCAAGGTACCGGAAGACTATGTTTTTGTGATGGGGGACAATCGGAATAACAGCT ATGATTCACATGTTTGGGGTCCTCTACCAAGGAAGAACATAATCGGAAGATCAGTGGTCCGGTATTGGCCTCCTTACCGGATCGGCGGCACAATATCTGA GACCAAATGCACCGTTGATAAACTGGAGAGCACTGCAGCCCCTGCACTCAAGTCCAACTGA
AA sequence Show only first row Show all	>Lus10023651 pacid=23148385 polypeptide=Lus10023651 locus=Lus10023651.g ID=Lus10023651.BGIv1.0 annot-version=v1.0 MISPSQIPNFQSTSLFSKPLLIPHSHSFPRFSISLSNPTHDIKFTVKDGSLRQKKSTVVVAGASNSDDGGGGGDDGGDGELEKRSGVLPEWLNFSLDDAK TVVAALAISLAFRNFIAEPRYIPSLSMYPTFDVGDRLVAEKVTYYFREPCTNDIVIFKSPPVLQKAGYTDDDVFIKRIVAKEGDTVEVRNGKLVVNGVER DEKFINEKPSYNMKPTKVPEDYVFVMGDNRNNSYDSHVWGPLPRKNIIGRSVVRYWPPYRIGGTISETKCTVDKLESTAAPALKSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24590		PLSP1	plastidic type i signal peptid...		Lus10023651 [exp]	0	1
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028698 [exp]	10.2	0.8895
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10007589 [exp]	13.9	0.8689
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028726 [exp]	15.8	0.8839
AT4G21445			unknown protein		Lus10002594 [exp]	17.7	0.8852
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005030 [exp]	18.0	0.8829
AT3G12930			Lojap-related protein (.1)		Lus10027381 [exp]	24.5	0.8503
AT2G33450			Ribosomal L28 family (.1)		Lus10023747 [exp]	25.8	0.8833
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10032862 [exp]	26.8	0.8649
AT1G48460			unknown protein		Lus10032738 [exp]	33.8	0.8669
AT5G65220			Ribosomal L29 family protein ...		Lus10019653 [exp]	39.2	0.8687

Compare expression of checked genes

Lus10023651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.