Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45688 180 / 3e-54 unknown protein AT3G24600 176 / 6e-51 Late embryogenesis abundant protein, group 2 (.1) AT5G42860 170 / 2e-50 unknown protein AT4G35170 142 / 3e-40 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G41990 117 / 9e-31 unknown protein AT3G08490 58 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034926 [exp] 604 / 0 AT1G45688 182 / 5e-55 unknown protein Lus10035869 [exp] 282 / 3e-94 AT1G45688 219 / 3e-69 unknown protein Lus10025793 [exp] 280 / 1e-93 AT1G45688 221 / 5e-70 unknown protein Lus10010232 [exp] 199 / 1e-61 AT1G45688 416 / 3e-146 unknown protein Lus10029743 [exp] 194 / 1e-59 AT1G45688 301 / 4e-101 unknown protein Lus10009749 [exp] 162 / 1e-47 AT5G42860 256 / 2e-84 unknown protein Lus10022644 [exp] 152 / 2e-43 AT4G35170 279 / 4e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003341 [exp] 126 / 2e-33 AT2G41990 221 / 4e-70 unknown protein Lus10010231 [exp] 69 / 1e-14 AT5G42860 84 / 1e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183600 [exp] 296 / 6e-100 AT1G45688 185 / 4e-56 unknown protein Potri.003G052900 [exp] 290 / 2e-97 AT1G45688 176 / 6e-53 unknown protein Potri.006G160100 [exp] 290 / 3e-97 AT3G24600 184 / 3e-54 Late embryogenesis abundant protein, group 2 (.1) Potri.002G124600 [exp] 227 / 1e-72 AT1G45688 284 / 1e-94 unknown protein Potri.014G026800 [exp] 201 / 9e-63 AT1G45688 301 / 2e-101 unknown protein Potri.007G045000 [exp] 195 / 3e-60 AT1G45688 273 / 4e-90 unknown protein Potri.009G140600 [exp] 171 / 4e-51 AT2G41990 232 / 5e-75 unknown protein Potri.004G180900 [exp] 171 / 5e-51 AT2G41990 256 / 1e-84 unknown protein Potri.001G267200 [exp] 78 / 5e-16 AT3G08490 196 / 6e-61 unknown protein Potri.009G061300 [exp] 77 / 1e-15 AT3G08490 209 / 7e-66 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10023652 pacid=23148293 polypeptide=Lus10023652 locus=Lus10023652.g ID=Lus10023652.BGIv1.0 annot-version=v1.0 ATGTACAACGCCAAATCGTCGGAGTCGGACCTGACAAGCCTAGCTCCGTCCTCCCCTCGCTCCCCAAAGCGCCCGGTCATCTACTTCGTCCAGAGCCCCT CCCGTGACTCCCATGACGACGGCGACAAATCCGCCGTTTCCTCTTCTTCTCTCCCCAACACAACCCCCATCGACTCCCCTTCCCATCCTAATTACTACTC ACGCGCCTCCAGCCGCGTCTCCGGCACCTACGCCCTCGCTTCTTCTGCAGCCTCCTCCTGCTCCGGACGTAATAAAAAACTTTTACCCCCCAAACGCTCC GCCGGAGGGTCAGGACACTGCCATGTCATCCTCGAGGAAGCCGATTTTGTCGCTGCGGCTGTCGACCCCACCAAGTGTCGGCTTTTGCTGGTAGTGATGG GTTTCGCCGCCGTTTTCACTGCCTTCTGTTTCGTCATCTGGGGTGCTAGCCGTCCTTTCCGGCCCCACATCCTCGTCAAGAGCTTGACAGTTCACAACTT CTACTTCGGACAAGGATCAGACTTGACTGGTGTTCCCACAAAGATGCTCACCACGAACTGTTCCGTGGGGATCAAGGTATACAACCCAGCTTCTTTCTTC GGAATCAGAATCACCTCTACTCCTCTTAATCTCATGTTCTCTGAGCTCATCGTAGCAACCGGCCAGCTGAGGTCCTATTACCAACCGAGGAAGAGCCACC GAGCAGTCTCGGTCAACGTCAACGGGATGAAAGTCCCACTTTACGGTGCGGGGGCGAGCTTAACGAGATCGGCTGGTGAAGAAGTTCAGATTCCGGTGAC ATTGGTTTTCCAAGTGAGATCCAAAGGCTACGTTGTTGGGAAATTGGTGAAATCATGGCATACACAGCGGATATCTTGTGCTCTTGTGTTTGATTCAAGA ACAAACAAACCCATTCCGCTTAAAAAGCGCTCTTGTACATACAAACTCATCTGA
AA sequence Show only first row Show all	>Lus10023652 pacid=23148293 polypeptide=Lus10023652 locus=Lus10023652.g ID=Lus10023652.BGIv1.0 annot-version=v1.0 MYNAKSSESDLTSLAPSSPRSPKRPVIYFVQSPSRDSHDDGDKSAVSSSSLPNTTPIDSPSHPNYYSRASSRVSGTYALASSAASSCSGRNKKLLPPKRS AGGSGHCHVILEEADFVAAAVDPTKCRLLLVVMGFAAVFTAFCFVIWGASRPFRPHILVKSLTVHNFYFGQGSDLTGVPTKMLTTNCSVGIKVYNPASFF GIRITSTPLNLMFSELIVATGQLRSYYQPRKSHRAVSVNVNGMKVPLYGAGASLTRSAGEEVQIPVTLVFQVRSKGYVVGKLVKSWHTQRISCALVFDSR TNKPIPLKKRSCTYKLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45688			unknown protein		Lus10023652 [exp]	0	1
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	6.7	0.7065
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004285 [exp]	9.5	0.6593
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	11.8	0.6641
					Lus10008602 [exp]	12.3	0.5936
AT1G07175			unknown protein		Lus10018252 [exp]	16.3	0.6218
AT3G15280			unknown protein		Lus10005404 [exp]	19.9	0.6591
AT1G53440			Leucine-rich repeat transmembr...		Lus10030626 [exp]	26.5	0.5637
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10014307 [exp]	33.9	0.6165
AT1G44100		AAP5	amino acid permease 5 (.1)		Lus10008844 [exp]	35.7	0.5516
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	36.6	0.5750

Compare expression of checked genes

Lus10023652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.