Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52560 199 / 8e-64 HSP20-like chaperones superfamily protein (.1.2) AT4G27670 95 / 2e-23 HSP21 heat shock protein 21 (.1) AT1G53540 65 / 1e-12 HSP20-like chaperones superfamily protein (.1) AT1G07400 59 / 2e-10 HSP20-like chaperones superfamily protein (.1) AT5G51440 59 / 4e-10 HSP20-like chaperones superfamily protein (.1) AT1G59860 57 / 4e-10 HSP20-like chaperones superfamily protein (.1) AT3G46230 57 / 4e-10 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT4G25200 56 / 2e-09 ATHSP23.6-MITO mitochondrion-localized small heat shock protein 23.6 (.1) AT2G29500 53 / 1e-08 HSP20-like chaperones superfamily protein (.1) AT5G37670 50 / 8e-08 HSP15.7CI HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024225 [exp] 353 / 7e-124 AT1G52560 197 / 4e-63 HSP20-like chaperones superfamily protein (.1.2) Lus10006444 [exp] 77 / 9e-17 AT4G27670 135 / 1e-39 heat shock protein 21 (.1) Lus10031154 [exp] 61 / 7e-11 AT4G25200 224 / 1e-74 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10011385 [exp] 57 / 1e-09 AT4G27670 133 / 9e-39 heat shock protein 21 (.1) Lus10028937 [exp] 57 / 4e-09 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10040723 [exp] 54 / 6e-09 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 54 / 8e-09 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10031730 [exp] 55 / 2e-08 AT4G25200 215 / 3e-69 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10042408 [exp] 53 / 2e-08 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G192600 [exp] 215 / 5e-70 AT1G52560 191 / 8e-61 HSP20-like chaperones superfamily protein (.1.2) Potri.012G022400 [exp] 82 / 1e-18 AT4G27670 221 / 7e-73 heat shock protein 21 (.1) Potri.010G053400 [exp] 80 / 9e-18 AT4G27670 141 / 2e-41 heat shock protein 21 (.1) Potri.004G187450 [exp] 64 / 1e-12 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 64 / 3e-12 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.004G187202 [exp] 64 / 3e-12 AT2G29500 209 / 1e-70 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 63 / 3e-12 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 62 / 1e-11 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 61 / 2e-11 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.015G005801 [exp] 61 / 3e-11 AT4G27670 0 / 1 heat shock protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10023653 pacid=23148369 polypeptide=Lus10023653 locus=Lus10023653.g ID=Lus10023653.BGIv1.0 annot-version=v1.0 ATGGCTCTGCAGGCACGATTGGGGTTAATAAGGAATTTCACCAAACGTGCGTGGTCATGTGCCGCTGCTGGCCGCAGCACTACACCAACGCCTCCATCGA TTACCGCCGGTGATTGGAAGTACCACCACTGGAGTACTAACAGTAGACGTTATGATGAGGATCAGTTAATAAAGAACAGCTGGTCGTCGAAGAGGTTTAT GGCAAACACCGCAGCTGGCGAGACGTCAGATGGGAAACAGGTCGCTGTGGAGACCACAACCACCGACGACCAAGGCCGGCGCAGAGGCAAGAGAAGGCCC CCCGCTTTCTGGAGGGGAAATGGCGGGGAGTTCATTCCGGCCCTTCAAGAATTATTTCCGTCGTCGGGGTTGGGCAACGCGCTGCTTCAAGCGACGGAGA ACATAAACAGACTGTTTCAGAATCTGAACGTGTCGCCGTCCAAATTCATCGGCCGGATCAAGGAGAAAGACGAGTGCTACAAGCTCCGTTACGAGGTGCC AGGGCTATCCAAGGAAGACCTCAAGATCACTATACATGACGGCCTTTTAACGATCAAGGGCGAACACAAGGAGGAAGCACAAGGTGATGGAGAGGATGAA TCGGACGACGAGTTTTGGTCGGCCAGAAGCTACGGGTTTTACCATACCACCGTTCAGCTGCCGGAAGACGCCAAATCGGATGATATCATGGCGGAGTTGA AAGATGGACTTCTTCATATAACAATTCCCAGGACTGAGAAGCCCAAAGATGCTGTTAAGGAGGTCCAAATCCATTAG
AA sequence Show only first row Show all	>Lus10023653 pacid=23148369 polypeptide=Lus10023653 locus=Lus10023653.g ID=Lus10023653.BGIv1.0 annot-version=v1.0 MALQARLGLIRNFTKRAWSCAAAGRSTTPTPPSITAGDWKYHHWSTNSRRYDEDQLIKNSWSSKRFMANTAAGETSDGKQVAVETTTTDDQGRRRGKRRP PAFWRGNGGEFIPALQELFPSSGLGNALLQATENINRLFQNLNVSPSKFIGRIKEKDECYKLRYEVPGLSKEDLKITIHDGLLTIKGEHKEEAQGDGEDE SDDEFWSARSYGFYHTTVQLPEDAKSDDIMAELKDGLLHITIPRTEKPKDAVKEVQIH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	0	1
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	1.7	0.9579
AT3G10020			unknown protein		Lus10002842 [exp]	2.0	0.9397
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10006444 [exp]	3.0	0.9513
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	3.2	0.9324
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10009226 [exp]	4.0	0.9069
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10023633 [exp]	5.3	0.8791
AT3G02125			unknown protein		Lus10013196 [exp]	5.5	0.9206
AT1G52560			HSP20-like chaperones superfam...		Lus10024225 [exp]	5.7	0.9554
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	6.2	0.8614
AT3G07840			Pectin lyase-like superfamily ...		Lus10043087 [exp]	8.5	0.8670

Compare expression of checked genes

Lus10023653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.