Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42030 91 / 3e-21 ABIL4 ABL interactor-like protein 4 (.1) AT2G46225 86 / 3e-19 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3) AT3G49290 79 / 2e-16 ABIL2 ABL interactor-like protein 2 (.1.2) AT5G24310 73 / 5e-15 ABIL3 ABL interactor-like protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034928 [exp] 219 / 4e-72 AT5G42030 87 / 4e-21 ABL interactor-like protein 4 (.1) Lus10043223 [exp] 179 / 1e-50 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10011102 [exp] 153 / 2e-41 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10034927 [exp] 139 / 2e-37 AT3G24620 564 / 0.0 RHO guanyl-nucleotide exchange factor 8 (.1) Lus10008737 [exp] 87 / 2e-19 AT2G46225 377 / 5e-132 ABI-1-like 1 (.1.2.3) Lus10002151 [exp] 87 / 2e-19 AT2G46225 370 / 2e-129 ABI-1-like 1 (.1.2.3) Lus10005919 [exp] 77 / 7e-16 AT5G24310 400 / 2e-140 ABL interactor-like protein 3 (.1.2) Lus10022393 [exp] 66 / 3e-12 AT5G24310 360 / 2e-125 ABL interactor-like protein 3 (.1.2) Lus10032421 [exp] 58 / 2e-09 AT3G49290 171 / 2e-51 ABL interactor-like protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G082600 [exp] 155 / 8e-46 AT2G46225 94 / 1e-22 ABI-1-like 1 (.1.2.3) Potri.014G092300 [exp] 92 / 2e-21 AT2G46225 396 / 1e-139 ABI-1-like 1 (.1.2.3) Potri.002G165900 [exp] 92 / 3e-21 AT2G46225 397 / 5e-140 ABI-1-like 1 (.1.2.3) Potri.003G142800 [exp] 77 / 5e-16 AT3G49290 292 / 3e-98 ABL interactor-like protein 2 (.1.2) Potri.012G016900 [exp] 74 / 5e-15 AT3G49290 353 / 5e-122 ABL interactor-like protein 2 (.1.2) Potri.001G088100 [exp] 65 / 1e-11 AT3G49290 265 / 9e-88 ABL interactor-like protein 2 (.1.2) Potri.018G082400 [exp] 46 / 2e-05 AT3G24620 597 / 0.0 RHO guanyl-nucleotide exchange factor 8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023654 pacid=23148277 polypeptide=Lus10023654 locus=Lus10023654.g ID=Lus10023654.BGIv1.0 annot-version=v1.0 ATGGATTCAGACCACCAACTGTCTCAGTTCCTCAAGTCTCTCCAAGAACTTAAGGAGTTGAGGTCTCAGCTCCATAATGCAGCAGCTTACTGTGAGAAGA GTTTTCTGAAGTCCAACGACAAGAAAAAGATCTTGGAGAGCACAAAAGAGTACGTCTGCAGTGCTGTTGTAACAGTTGTGGATCATTTGGGGAGTGTTTC AGCCAATCTGAACATCACCATTTCTGACAATGCTACTGGCTTCTCTGAAGCTGAACTCAGGATAGATTCCTTGAAGCAAAGATTTCTTGCGTATGAACTC TACGCGCAGAAGATTGCACTGACTAGAACAAGATGGAGCCCCAACTTCCCAAAATCACAGCCCCGCTATCTCTCGACACCAGCTGGGAAATCAAACAGGT GCAACAAGAAGGTGATGTTTGAGGCAGCAGAGGAGTTGCCACTTTTTTTCTACACATACTCTCACAAGCCTTCTTCTACAAACTCAAATCTCTCCATTGG GTGTGGGTATAAAATTCTGCAGTACCAGTTCAGGACACGATTACAGCGGGTGCGAAAGGGCAGAGGGCATCCACGTTTGATTTTCAGATTCTCAAGCCTC TCCAGGTACGAAGATTTCTTAGGAGTGGCTACTGGTTTCACGTTTCCCTTGTCTTCCAAGCCCTCGATGTTCCCCGATGATGCTGACTTCTTCAACTCAC TCTCCCCCTTGTCCATACCCCATCCCATGAAGTCCGACAGCGTCATTGATGATGGTGTCTCTGCAGATGATGACGTTTCTTCCTCCGGAAGCTTCTCACT CAGATCCGGTGGTGGATTATGGGCCGCATTGTCAGCAAACAGGACGTCTTCGATCCTCGACAACACTGTGTATGCCAAGCTCTCTATGATCCTCGAGTAG
AA sequence Show only first row Show all	>Lus10023654 pacid=23148277 polypeptide=Lus10023654 locus=Lus10023654.g ID=Lus10023654.BGIv1.0 annot-version=v1.0 MDSDHQLSQFLKSLQELKELRSQLHNAAAYCEKSFLKSNDKKKILESTKEYVCSAVVTVVDHLGSVSANLNITISDNATGFSEAELRIDSLKQRFLAYEL YAQKIALTRTRWSPNFPKSQPRYLSTPAGKSNRCNKKVMFEAAEELPLFFYTYSHKPSSTNSNLSIGCGYKILQYQFRTRLQRVRKGRGHPRLIFRFSSL SRYEDFLGVATGFTFPLSSKPSMFPDDADFFNSLSPLSIPHPMKSDSVIDDGVSADDDVSSSGSFSLRSGGGLWAALSANRTSSILDNTVYAKLSMILE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10023654 [exp]	0	1
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10017134 [exp]	2.4	0.9434
AT1G14270			CAAX amino terminal protease f...		Lus10036748 [exp]	3.3	0.9141
AT5G57670			Protein kinase superfamily pro...		Lus10019990 [exp]	8.2	0.8708
AT1G68260			Thioesterase superfamily prote...		Lus10031948 [exp]	8.5	0.9178
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	9.4	0.9345
AT1G56050			GTP-binding protein-related (....		Lus10031789 [exp]	14.0	0.9195
AT2G33450			Ribosomal L28 family (.1)		Lus10023747 [exp]	15.1	0.9269
AT5G64250			Aldolase-type TIM barrel famil...		Lus10006545 [exp]	15.3	0.8901
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10019417 [exp]	17.0	0.8698
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	17.4	0.9245

Compare expression of checked genes

Lus10023654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.