Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55205 50 / 4e-09 unknown protein AT3G13674 44 / 6e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024700 [exp] 119 / 5e-36 AT1G55205 80 / 4e-20 unknown protein Lus10032319 [exp] 115 / 7e-34 AT1G55205 75 / 5e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G082800 [exp] 67 / 8e-16 AT3G13674 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023655 pacid=23148300 polypeptide=Lus10023655 locus=Lus10023655.g ID=Lus10023655.BGIv1.0 annot-version=v1.0 ATGGCATCTGTTATCTCTCGGTTATCGTCACGATTACAGCCCGTCGCTTTCAAACTCAACAAAGGATCACTCGCTCTACAGTTTCCCTCGTTAAGCTCTT GCCTTCCGTCGTCTCGAATCAATGTCTCTGCTACAAATCTCTCTCGCCTGTCCAGATTACCGGTGGAATTGAGCTGCGTGGTCTCGATGTTGCCGTTGCA TAGTGCGATTGCTTCAGCGAGGTTAATATCGAGCTTGTCCATTGACTCGCAGACTTGGACTTTAGTCCCTCAAGGTATCTCCATGCCTTTATGA
AA sequence Show only first row Show all	>Lus10023655 pacid=23148300 polypeptide=Lus10023655 locus=Lus10023655.g ID=Lus10023655.BGIv1.0 annot-version=v1.0 MASVISRLSSRLQPVAFKLNKGSLALQFPSLSSCLPSSRINVSATNLSRLSRLPVELSCVVSMLPLHSAIASARLISSLSIDSQTWTLVPQGISMPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55205			unknown protein		Lus10023655 [exp]	0	1
AT5G19370			rhodanese-like domain-containi...		Lus10000413 [exp]	4.7	0.7895
AT2G35605			SWIB/MDM2 domain superfamily p...		Lus10033312 [exp]	11.0	0.7318
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Lus10035645 [exp]	11.0	0.7486
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10031051 [exp]	11.7	0.7898
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10006169 [exp]	17.9	0.7367
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	18.0	0.7676
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10023640 [exp]	19.4	0.7490
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	20.7	0.7651
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10021932 [exp]	21.8	0.7197
AT3G48425			DNAse I-like superfamily prote...		Lus10043333 [exp]	25.0	0.7482

Compare expression of checked genes

Lus10023655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.