Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29000 376 / 2e-123 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 348 / 5e-113 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT5G25790 216 / 7e-64 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G16160 102 / 2e-23 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G22760 101 / 2e-22 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G14770 100 / 7e-22 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G04850 99 / 2e-21 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G22780 96 / 1e-20 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043225 [exp] 469 / 1e-159 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 378 / 4e-124 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 217 / 9e-63 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10009494 [exp] 215 / 2e-61 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002033 [exp] 99 / 2e-21 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002895 [exp] 99 / 3e-21 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10006604 [exp] 76 / 4e-14 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 76 / 6e-14 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160400 [exp] 527 / 0 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G083000 [exp] 419 / 2e-142 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G039300 [exp] 251 / 5e-75 AT2G20110 269 / 2e-81 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.001G184800 [exp] 215 / 5e-63 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.010G083400 [exp] 105 / 1e-23 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.008G156100 [exp] 102 / 2e-22 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.005G051100 [exp] 99 / 3e-21 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.006G251200 [exp] 96 / 2e-20 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G030000 [exp] 92 / 2e-19 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.001G173600 [exp] 72 / 5e-13 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [flax] [poplar] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Lus10023656 pacid=23148362 polypeptide=Lus10023656 locus=Lus10023656.g ID=Lus10023656.BGIv1.0 annot-version=v1.0 ATGGGGGAAGGTGAAGGGAGCGAATTCCCTCCAAATAAGGCTCAACAATCAGAGTCTCAAGAAGTTATCCCTTCATCCGATTTCCCAGCGAAAAAGCTAG CTAGGCAGCTCGATTTCACCCAGGACAGTCTCACTGTCCCTCCTCTCCCTGACAATCCTCCGGCGGCGGCTTCTACTGCTCCGAAACTGGAAGTCCAGTC AGCTGTGACTCAGAACCAACCGCACCCTATCGTTGATGTGCCTCAGCCGCCAATTCACCAGCACCCGAATCAACAGCAACAACAACAGCAGCAGCAGCAG CAAGGTCCTCCAAGTTTGAAGCCTGTAAAACCCGAGTCCCCGAAATCAAGATCAAGAACTGCAGCAGAGTTGAAAGATGGTACTCCAAAGAAGCAGAAAC AGTGTAATTGTAAACACTCACGGTGCTTGAAGCTATACTGTGAGTGTTTTGCATCTGGAACATATTGTGATGGATGCAATTGTGGAAATTGCTACAATAA TGTTGAGAATGAGGCTGCCCGTCGAGAAGCAATAGAAGCAACTTTGGAGCGTAACCCAAATGCTTTTCGGCCAAAAATCGCAAGCAGCCCACATGCACCA CGAGATAACCGGGAGGAGAATGGGGATGTACTTGTGTTGGCAAAACACAACAAGGGATGCCACTGCAAAAAGTCAGGATGCCTAAAAAAGTACTGTGAAT GCTTCCAAGCAAACATTCTTTGTTCTGAAAATTGCAAGTGTATGGACTGCAAAAATTTTGAAGGAAGTGAAGAACGACAGGCTCTCTTCCACAGCGACCA TGCCAACAACATTGCATACATTCAGCAGGCTGCAAATGCTGCTGCTAATGCTGCTATAACAGGAGCTATTGGTTCTTCTGGGTTTATCTCTCCTCCAGTG TCCAGGAAGAGAAAAGGTTCGGAACTATTTTTTGGCCAAACAGGCAGGGATCCGTCACATCACAGGCCGACACATATTCCGCATGCAAATCAAAACAGGG ATCCTTCACCATCTTCAAATTCTGTTGTTCGTGGCTGTAGCACTACAACGTTGACCCCTTCCAAATTCACATACAGGTCTCTGTTAGCAGACATCATTCA ACCACAGGACATAAAAGAACTTTGTTCAGTATTGGTGGTTTTATCGGGAGAAGCTGCTAAGACACTTGCGGAGCAAAGAAGTGAGCAAGAGAAGCAGGTT GAAAACCAGACAGAAGCTTCAATTGCTTCGTCAAGTCAAGAAAGGTTGGAGACCCGGAAAGAATCTGACGCCGATAAAAGTGTTCCCGGCGATTTCTCCA ATGTTAACCCAAGTAATAAGGGGGGTTCTGGTGTGTCCACCTCAGATGACAGGGAAGAACCATCTATAGTGAGGCCAATTTCACCAGGAACTTTGGCACT TATGTGCGATGAGCAAGACACAATCTTTATGGAAGCTGGCTTACCCAATGATTTGACTGGCCATGGAGGAGAAACCAAGTGTTCATCATTGGCAAGAACA GAGCCTGCTGATCAGAAAGATATGCTCAGCAACGGCACAACAACGAGTACTCGAGCTGTCCCGGTAGGGATTCAACCTAGCGTCCCCTTCAGGAATGGTG CATCGAGAAATGTCATTCCACCTACAGCTAAGCCACTTCAAATGGTCAGTTCAGCAGTTGCAGCACCATCAAACACAGTAGATTTTCCGAAAGGTCCAGC ATTGTCTCAAAATATGGATGGGAAACCGAAGTCATGA
AA sequence Show only first row Show all	>Lus10023656 pacid=23148362 polypeptide=Lus10023656 locus=Lus10023656.g ID=Lus10023656.BGIv1.0 annot-version=v1.0 MGEGEGSEFPPNKAQQSESQEVIPSSDFPAKKLARQLDFTQDSLTVPPLPDNPPAAASTAPKLEVQSAVTQNQPHPIVDVPQPPIHQHPNQQQQQQQQQQ QGPPSLKPVKPESPKSRSRTAAELKDGTPKKQKQCNCKHSRCLKLYCECFASGTYCDGCNCGNCYNNVENEAARREAIEATLERNPNAFRPKIASSPHAP RDNREENGDVLVLAKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHSDHANNIAYIQQAANAAANAAITGAIGSSGFISPPV SRKRKGSELFFGQTGRDPSHHRPTHIPHANQNRDPSPSSNSVVRGCSTTTLTPSKFTYRSLLADIIQPQDIKELCSVLVVLSGEAAKTLAEQRSEQEKQV ENQTEASIASSSQERLETRKESDADKSVPGDFSNVNPSNKGGSGVSTSDDREEPSIVRPISPGTLALMCDEQDTIFMEAGLPNDLTGHGGETKCSSLART EPADQKDMLSNGTTTSTRAVPVGIQPSVPFRNGASRNVIPPTAKPLQMVSSAVAAPSNTVDFPKGPALSQNMDGKPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10023656 [exp]	0	1
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10038268 [exp]	1.4	0.8988
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	1.7	0.8972
AT5G46070			Guanylate-binding family prote...		Lus10025456 [exp]	3.2	0.9002
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10024384 [exp]	3.7	0.8763
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	4.0	0.8830
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10035798 [exp]	8.5	0.8752
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10026837 [exp]	11.5	0.8583
AT1G29370			Kinase-related protein of unkn...		Lus10004543 [exp]	13.0	0.8541
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10007164 [exp]	16.2	0.8294
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	18.7	0.8511

Compare expression of checked genes

Lus10023656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.