Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28990 90 / 3e-20 RNA-binding protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160500 [exp] 202 / 1e-62 AT4G28990 96 / 9e-22 RNA-binding protein-related (.1.2) Potri.018G083100 [exp] 163 / 1e-47 AT4G28990 124 / 3e-32 RNA-binding protein-related (.1.2) Potri.009G076600 [exp] 42 / 0.0003 AT5G58470 199 / 4e-59 TBP-associated factor 15B (.1.2) Potri.001G281300 [exp] 41 / 0.0006 AT5G58470 198 / 1e-58 TBP-associated factor 15B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10023657 pacid=23148302 polypeptide=Lus10023657 locus=Lus10023657.g ID=Lus10023657.BGIv1.0 annot-version=v1.0 ATGCGTGCAGGCTCTGGTTCGCCTCCACGTCGTAGGGATGGAGATCGTCTGTATGCTTCTGATTTTGATCATTCAGGGGGACCACCCAGAGGCCGTGAAA ATTTGGGTGGGAGGGATGCAGGTAGATTTAGAGATTCTTCGTCGACTTTCAGCCGAGGAAGAAGTGGTGGCAGGCCACTTGTGAGAGAATTTGCAAGGCC TGGCCCGGGGCTTGGTCCTGGACCTTTCAACGGAGAGAACATGAGCAGGAATAATCCAAATGTGCGTCCCAGGGAAGGAGATTGGGTTTGTGAAGATCCT ATGTGTATGAACCTGAACTTTGCAAGGAGAGAGGTTTGCAACAACTGCAAGAAGCCTCGCGTTTCACAAACATGGGGAAGTCCTCGAAGAGGGTATCCAG GTCCACCACCTCGACGGCCTCCAATGGATCTTTCTCCTGGCAGAAACATGAATGGCTACAGATCTCCTCCTCCCCGTGTTTGGCCAAGGGATCGAAGTCC TAGGGCTTTTGGACCGGGTGGACCTCCACCTCCCAGACATGGAGGAAGGTTTCCGGACCATGACATGCGTAGAGAACGTCCTGATTATCCAGACGGCGAT TACAGGGGAAGGAGCAAATTCGATAGGCCAATGTCTCCTCCAGCGGGAATGGCTCATAGGGGAGGACGTGGAAGGGATGGACTTTTTGAGGAAAGGAGAG GGTTTGATAGGCGGTTAGCTGTCCCGCCTTTGCCGGCACCCGCAACGATACCACCTCGACGTTGGGGACGAGACTTGAGAGAGAGCAGGTCTCCTATAAG AGGTAGGGGTGGGCTGCCTCCAAAACAATTTCGACGAGATGTGATGATGGAACTAGGAGGAAGAGACGATCGACAGCCTCTCGGTAGGGCAAGATAG
AA sequence Show only first row Show all	>Lus10023657 pacid=23148302 polypeptide=Lus10023657 locus=Lus10023657.g ID=Lus10023657.BGIv1.0 annot-version=v1.0 MRAGSGSPPRRRDGDRLYASDFDHSGGPPRGRENLGGRDAGRFRDSSSTFSRGRSGGRPLVREFARPGPGLGPGPFNGENMSRNNPNVRPREGDWVCEDP MCMNLNFARREVCNNCKKPRVSQTWGSPRRGYPGPPPRRPPMDLSPGRNMNGYRSPPPRVWPRDRSPRAFGPGGPPPPRHGGRFPDHDMRRERPDYPDGD YRGRSKFDRPMSPPAGMAHRGGRGRDGLFEERRGFDRRLAVPPLPAPATIPPRRWGRDLRESRSPIRGRGGLPPKQFRRDVMMELGGRDDRQPLGRAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28990			RNA-binding protein-related (....		Lus10023657 [exp]	0	1
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10002228 [exp]	14.0	0.7913
AT5G19900			PRLI-interacting factor, putat...		Lus10000189 [exp]	15.2	0.7793
AT5G19900			PRLI-interacting factor, putat...		Lus10000691 [exp]	23.7	0.7664
AT1G56423			unknown protein		Lus10010918 [exp]	28.1	0.7480
AT5G19900			PRLI-interacting factor, putat...		Lus10019670 [exp]	28.6	0.7735
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	32.7	0.7651
AT5G42440			Protein kinase superfamily pro...		Lus10001120 [exp]	37.3	0.7322
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10022459 [exp]	37.5	0.7512
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	39.4	0.7525
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001696 [exp]	40.3	0.7165

Compare expression of checked genes

Lus10023657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.