Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28980 535 / 0 CAK1AT, CDKF;1 CYCLIN-DEPENDENT KINASE F;1, CDK-activating kinase 1AT (.1.2) AT1G18040 124 / 3e-31 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G66750 119 / 7e-30 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT1G73690 119 / 1e-29 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT3G48750 111 / 2e-27 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT4G19110 111 / 1e-26 Protein kinase superfamily protein (.1.2.3) AT1G74330 108 / 4e-25 Protein kinase superfamily protein (.1.2) AT5G10270 107 / 8e-25 CDKC;1 cyclin-dependent kinase C;1 (.1) AT5G64960 106 / 1e-24 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT5G63370 106 / 1e-24 CDKG;1 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034931 [exp] 560 / 0 AT4G28980 333 / 4e-112 CYCLIN-DEPENDENT KINASE F;1, CDK-activating kinase 1AT (.1.2) Lus10040530 [exp] 112 / 7e-27 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10017371 [exp] 110 / 2e-26 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10042588 [exp] 109 / 2e-25 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 109 / 2e-25 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10022043 [exp] 110 / 3e-25 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10036106 [exp] 108 / 3e-25 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10008303 [exp] 105 / 2e-24 AT4G19110 616 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10015816 [exp] 105 / 6e-24 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083300 [exp] 582 / 0 AT4G28980 640 / 0.0 CYCLIN-DEPENDENT KINASE F;1, CDK-activating kinase 1AT (.1.2) Potri.012G052100 [exp] 117 / 1e-28 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.014G079100 [exp] 115 / 6e-28 AT1G73690 573 / 0.0 cyclin-dependent kinase D1;1 (.1) Potri.004G133500 [exp] 110 / 4e-27 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.002G003400 [exp] 107 / 7e-26 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.006G024600 [exp] 109 / 1e-25 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.010G056900 [exp] 109 / 3e-25 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G257500 [exp] 104 / 9e-25 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.016G142800 [exp] 102 / 4e-24 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.008G178200 [exp] 105 / 5e-24 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023659 pacid=23148240 polypeptide=Lus10023659 locus=Lus10023659.g ID=Lus10023659.BGIv1.0 annot-version=v1.0 ATGGAGCCCACATCGTCGCCGGCGGACCTGCCACCGCTATCCAAGAGCTGGAGCATCTACACCCGCCCCGAAATCATAGCCAAGTATCAAATCTACGAGC GGGTCGGTTCAGGCGCCTACTCCGACGTTTACAAAGCCCGTCGCCTCTCCGACGACCTCCTTGTGGCCCTGAAAGAGGTCCATGACTACCAGGCCGCCTT CCGTGAGATCGAGGCCCTCCGAATCCTGCAGAACTGCCCTAACGTCGTCGTCCTCCACGAGTACTTCTGGCGGGACGACGAGGATGCCGTTCTGGTCCTC GAGTTCCTCCGCACCGACTTGACGGCGGTCATCCGGGACGGCAGGAAGAAGGGCGGGATCCGTGCCGGCGAGGTCAAGCGCTGGATGATGCAGATTCTGT CCGGGCTCGACGCCTGCCATAGGAATATGATCGTGCATCGCGATTTGAAGCCCGGGAATCTCTTGATCTCGCACGACGGGATTCTCAAATTGGCCGATTT CGGTCAGGCTAGGATTCTCACAGAGGCTGGATCCATTGCCGCTGATGACAACCTTCATCCAAGTGAACCAATATACATAAACCATGGAGCTCCTAATACT GCCGAGTTCAATTACGAGAGAGGTAACTGGGGTATGAAACGACCTCTAGCAAGCTTAGGCGAAGGAGGAGGAGATTTGTACGGTCAAGATCAGTTGGATG AAATGGAGAAGGATACAAGAGATGGCAACTTATCTTGTCTTGCAACTGGTACCGCTAGCGAGTTTGGGGACGATAGCCCCAATTTCGATGATGTCGATAT TAGGGATGATAATAGGCAAGGTTGTTTCACATCTTGCGTTGGGACTCGATGGTTCAGGCCTCCCGAGCTGCTCTACGGGTCAACAGATTATGGAATGGAG ATTGATCTTTGGTCGTTGGGATGCATTTTCGCCGAGCTTTTGACCTTAGAGCCTCTCTTTCCAGGGTCATCTGATATAGATCAACTTGCAAGGATTATCA ATGTCTTGGGCAATTTGACAGAACATGTCTGGCCAGGTTGTGTGAACCTCCCCGATTATGGGACAATCTCCTTTGGCAAGGTGGAAAGTCCTGCCGGATT GAAATCCTGCCTCGTGAAATGTTCGGATGAAGAGGTCTCGCTGGTGAAGAAGTTGGTCTGTTACGACCCTAGTAGCAGAGCTACTGCCATGGAGTTGCTC CATGATACTTACTTTACCGTAGAGCCACTGCCTGTCCCGGTCTCGGATCTTCACGTGCCTCGAACAAACACCGACATTGATACGGACTCTCCTGGATGGT ACAACTATAAAGATGGAGGCTCTGACTCTGATTTTGAAGACTTTGGTCCCATGCATGTTACAGAGACTGGTAGTGGCTTTTCAGTCAAGTTCTCATGA
AA sequence Show only first row Show all	>Lus10023659 pacid=23148240 polypeptide=Lus10023659 locus=Lus10023659.g ID=Lus10023659.BGIv1.0 annot-version=v1.0 MEPTSSPADLPPLSKSWSIYTRPEIIAKYQIYERVGSGAYSDVYKARRLSDDLLVALKEVHDYQAAFREIEALRILQNCPNVVVLHEYFWRDDEDAVLVL EFLRTDLTAVIRDGRKKGGIRAGEVKRWMMQILSGLDACHRNMIVHRDLKPGNLLISHDGILKLADFGQARILTEAGSIAADDNLHPSEPIYINHGAPNT AEFNYERGNWGMKRPLASLGEGGGDLYGQDQLDEMEKDTRDGNLSCLATGTASEFGDDSPNFDDVDIRDDNRQGCFTSCVGTRWFRPPELLYGSTDYGME IDLWSLGCIFAELLTLEPLFPGSSDIDQLARIINVLGNLTEHVWPGCVNLPDYGTISFGKVESPAGLKSCLVKCSDEEVSLVKKLVCYDPSSRATAMELL HDTYFTVEPLPVPVSDLHVPRTNTDIDTDSPGWYNYKDGGSDSDFEDFGPMHVTETGSGFSVKFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10023659 [exp]	0	1
AT1G23780			F-box family protein (.1)		Lus10012441 [exp]	2.2	0.8551
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	4.2	0.8486
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10031634 [exp]	5.7	0.8210
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002913 [exp]	7.2	0.8169
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10033706 [exp]	9.5	0.8162
AT3G57990			unknown protein		Lus10021042 [exp]	11.4	0.7357
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10038993 [exp]	12.4	0.8016
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10009539 [exp]	15.7	0.8121
AT3G11760			unknown protein		Lus10029364 [exp]	17.1	0.7010
AT3G58050			unknown protein		Lus10017239 [exp]	17.9	0.8115

Compare expression of checked genes

Lus10023659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.