Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65980 265 / 5e-92 TPX1 thioredoxin-dependent peroxidase 1 (.1.2) AT1G65970 256 / 1e-88 TPX2 thioredoxin-dependent peroxidase 2 (.1) AT1G60740 253 / 2e-87 Thioredoxin superfamily protein (.1) AT1G65990 185 / 2e-56 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein (.1) AT3G52960 175 / 6e-56 Thioredoxin superfamily protein (.1) AT3G06050 106 / 3e-29 PRXIIF, ATPRXIIF peroxiredoxin IIF (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023180 [exp] 314 / 2e-111 AT1G65980 268 / 2e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10015077 [exp] 312 / 7e-111 AT1G65980 268 / 3e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10003373 [exp] 180 / 9e-58 AT3G52960 291 / 3e-100 Thioredoxin superfamily protein (.1) Lus10002843 [exp] 178 / 4e-57 AT3G52960 290 / 3e-100 Thioredoxin superfamily protein (.1) Lus10021932 [exp] 109 / 1e-29 AT3G06050 317 / 6e-111 peroxiredoxin IIF (.1) Lus10041218 [exp] 93 / 1e-22 AT3G06050 243 / 3e-79 peroxiredoxin IIF (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083500 [exp] 277 / 4e-97 AT1G65980 280 / 4e-98 thioredoxin-dependent peroxidase 1 (.1.2) Potri.001G423500 [exp] 277 / 5e-97 AT1G65980 285 / 5e-100 thioredoxin-dependent peroxidase 1 (.1.2) Potri.013G102100 [exp] 178 / 4e-57 AT3G52960 278 / 1e-95 Thioredoxin superfamily protein (.1) Potri.019G024000 [exp] 99 / 2e-26 AT3G06050 311 / 2e-109 peroxiredoxin IIF (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF08534 [flax] [poplar] Redoxin Redoxin
Representative CDS sequence Show only first row Show all	>Lus10023662 pacid=23148272 polypeptide=Lus10023662 locus=Lus10023662.g ID=Lus10023662.BGIv1.0 annot-version=v1.0 ATGGCTCCCATCGCTGCCGGTGCTACCTTGCCTGAGGGAACCCTCGCTTTCTTCGATGAGAACGATCAGCTCCAGCAGGTCTCCATCCACTCACTCGCCG CCGGCAAGAAGGTTGTCATCGTTGGCGTTCCCGGCGCATTTACTCCTACCTGCAGCTTGAAGCATGTTCCTGGATTCATCGAGAGAGCTGGGGATCTCAA AGCTAAGGGCGTTGCTGAGATCATCACTATTAGCGTGAATGATCCATTTGTGATGAAGGCTTGGTCCAAGACATTCCCAGAGAACAAAGACGTTAAGTTC TTGGCTGATGGATCTGCGACATACACCCATGCTCTGGGTCTTGAGCTTGATTTGAACGAGAAGGGTCTAGGAATCAGGTCAAGGAGGTTTGCTCTGTTGG TCGATGACCTCAAAGTGAAGGCTGCAAACGTTGAAGAAGGTGGTGACTTCACTGTTTCCAGCGTTGATGACATTATCAAGGCACTTGATGCTTGA
AA sequence Show only first row Show all	>Lus10023662 pacid=23148272 polypeptide=Lus10023662 locus=Lus10023662.g ID=Lus10023662.BGIv1.0 annot-version=v1.0 MAPIAAGATLPEGTLAFFDENDQLQQVSIHSLAAGKKVVIVGVPGAFTPTCSLKHVPGFIERAGDLKAKGVAEIITISVNDPFVMKAWSKTFPENKDVKF LADGSATYTHALGLELDLNEKGLGIRSRRFALLVDDLKVKAANVEEGGDFTVSSVDDIIKALDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10023662 [exp]	0	1
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10008470 [exp]	2.8	0.9271
AT1G36730			Translation initiation factor ...		Lus10004057 [exp]	3.9	0.9015
AT3G44150			unknown protein		Lus10029366 [exp]	4.2	0.9238
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	6.6	0.9206
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10034144 [exp]	8.9	0.9095
AT4G37830			cytochrome c oxidase-related (...		Lus10019250 [exp]	9.9	0.9228
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	10.2	0.9168
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037241 [exp]	10.4	0.8990
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Lus10030497 [exp]	11.0	0.9075
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10039164 [exp]	13.2	0.9161

Compare expression of checked genes

Lus10023662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.