Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 544 / 0 Major facilitator superfamily protein (.1) AT3G16180 540 / 0 Major facilitator superfamily protein (.1) AT1G69870 372 / 4e-121 NRT1.7 nitrate transporter 1.7 (.1) AT1G68570 366 / 3e-119 Major facilitator superfamily protein (.1) AT5G62680 362 / 1e-117 Major facilitator superfamily protein (.1) AT3G47960 360 / 2e-116 Major facilitator superfamily protein (.1) AT1G18880 355 / 5e-115 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT1G27080 346 / 1e-111 NRT1.6 nitrate transporter 1.6 (.1) AT3G54140 335 / 2e-107 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G62200 329 / 4e-105 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035860 [exp] 563 / 0 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 538 / 0 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10008539 [exp] 432 / 2e-145 AT1G52190 371 / 8e-122 Major facilitator superfamily protein (.1) Lus10037896 [exp] 411 / 2e-136 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10020101 [exp] 400 / 4e-133 AT1G52190 360 / 2e-117 Major facilitator superfamily protein (.1) Lus10037221 [exp] 394 / 1e-129 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 387 / 2e-127 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036705 [exp] 385 / 4e-126 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10017817 [exp] 379 / 5e-124 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G087500 [exp] 686 / 0 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 590 / 0 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 537 / 0 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 482 / 1e-164 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 482 / 1e-164 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 481 / 1e-164 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 476 / 1e-162 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 477 / 2e-162 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 469 / 1e-159 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 452 / 9e-153 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10023663 pacid=23148384 polypeptide=Lus10023663 locus=Lus10023663.g ID=Lus10023663.BGIv1.0 annot-version=v1.0 ATGGGAGAAAGGGGCGGAGTTAACATCGCCGGCGGCGCCGATGAAAGCCAATCAACCAAAGATGGTCATCGTACAAGGAAAGGTGGCTTGAAGACCATGC CCTTCATCATATCAAACGAGACACTCGAAAAAGTAGCCAGCGTTGGGCTTCATGCTAACATGACCTTCTACCTCCAGAAAGAATACCACATGAGCAATGC CACCGGCGCCAATGTCTTGTTCTTGTGGGGCGCCCTCTCCAATTTCACTCCAATTTTCGGCGCTTTCGCTTCCGATTCTTACCTCGGCCGATTCCGAATC ATTGCCATCGGCACCCTCATCACCCTTTTCGGAATGGTGGTTTTGTGGGCCACAGCAATATTCTCGACGGCGCAACCACCACCTTGCCGACTCAACGGGG GTCCCGCGGGGCACTGCCAGCCGGCAAATGCGGGCCAGCTCATCCTTCTTTTCACCTCATTCATCCTCATGGCTATTGGAGCGGGCGGGATAAGGCCATG TTCGCTGGCATTCGGGGCGGACCAACTCAACAACCCGAGTAACCCGAACAACGAAAGGACCCTACAAACCTTCTTCAGCTGGTACTACGCCTCGGTAGGT ATTTCGATCATCATCTCCGCTTTACTGATCGTCGCAATCCAGGAGAAATTCGGGTGGGTAATCGGGTTCGGGGTTCCCGTGGTATTCATGTTCCTGTCGG CCGTCATGTTCCTTTGCGGATCCAGATTGTACATCCGGGTGCCCGGTGATTCGACCCTGTTGACTAGTTTGGGTCAGGTGGTTGTTGCGGCGTGGAACAA AAGAGGCCAATCGTTGAAGCCGAGGGATTCTGTTCAGTGGTTTTATCATAGAGGTTCGAAACTTGTGAAGCCAACCGACAAATTAAGGTTCCTTAACAAA GCTTGCATGATCACAAATCCAACGAACGACATAGACACACTGACAGGACTTCCAAAAGACTCATATACCCTCTGCTCCGTCCAACAAGTAGAGGAGCTCA AATCCATTCTAAAAGTCATCCCAATCTGGTCAACCTCCATCATCATCGGCGTCACAATCAGCCAGCATTCCTTCCCTGCACTACAAGCAAGTTCCATGGA CCGCAGCTTCATCAGCCCCAACATCAAATTGCCTGCAGCATCCTACGGTGTATTCGGCATCATCACCCTCACTGTGTGGGTCGCGTTTTACGACCGCATT TTGGTCCCCATCCTCGCCAAATTCTTCAATCTCCCTGCTGGGATCTCCAACAAACATCGGATGGGGATCGGCCTTGCCATCTCTTGCATTGCAACCGCGG TCGCAGGCTTGGTCGAGCACAAACGACGAGCAGTCGCATTTAAGGAAGGCGTCGCGGATGACCACACTGCTGTGGTGGGGATGTCGGCCAGCTGGCTGAT TATGCAGTACTGTTTGACCGGACTCGGGGAGGCATTCAACATGATTGGTCAGATCGAATTCTATTACTCGCAGTTCCCTAGGAACATGAGGAGTATTGCG ATGGCGTTGGTGTCGCTAGGGCTTGGAATGGGGAATTTGGTGGGAAGTTTGATTGTAACGGTGGTTAATAACGTCACTAAGCGAGGCGGGAAAGTTAGCT GGGTGGGTAATAATTTGAATAGGGGACACTATGACTATTACTACTGGCTTCTGTCAGCTTTGAGTGTCGGGAATTTCTTTTACTATTTGGTTTGTAGCTG GGCTTATGGGAATGACGACAGAAAGATTTGGGATGAGGCGGAAGCCGAAATTGACGACGCAGAAGAAAGGGAGATGAAGAGTATTGAACGAGACTTGTGA
AA sequence Show only first row Show all	>Lus10023663 pacid=23148384 polypeptide=Lus10023663 locus=Lus10023663.g ID=Lus10023663.BGIv1.0 annot-version=v1.0 MGERGGVNIAGGADESQSTKDGHRTRKGGLKTMPFIISNETLEKVASVGLHANMTFYLQKEYHMSNATGANVLFLWGALSNFTPIFGAFASDSYLGRFRI IAIGTLITLFGMVVLWATAIFSTAQPPPCRLNGGPAGHCQPANAGQLILLFTSFILMAIGAGGIRPCSLAFGADQLNNPSNPNNERTLQTFFSWYYASVG ISIIISALLIVAIQEKFGWVIGFGVPVVFMFLSAVMFLCGSRLYIRVPGDSTLLTSLGQVVVAAWNKRGQSLKPRDSVQWFYHRGSKLVKPTDKLRFLNK ACMITNPTNDIDTLTGLPKDSYTLCSVQQVEELKSILKVIPIWSTSIIIGVTISQHSFPALQASSMDRSFISPNIKLPAASYGVFGIITLTVWVAFYDRI LVPILAKFFNLPAGISNKHRMGIGLAISCIATAVAGLVEHKRRAVAFKEGVADDHTAVVGMSASWLIMQYCLTGLGEAFNMIGQIEFYYSQFPRNMRSIA MALVSLGLGMGNLVGSLIVTVVNNVTKRGGKVSWVGNNLNRGHYDYYYWLLSALSVGNFFYYLVCSWAYGNDDRKIWDEAEAEIDDAEEREMKSIERDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16180			Major facilitator superfamily ...		Lus10023663 [exp]	0	1
AT3G52740			unknown protein		Lus10017046 [exp]	2.2	0.9276
AT3G47070			unknown protein		Lus10018216 [exp]	5.3	0.9046
AT1G50250		FTSH1	FTSH protease 1 (.1)		Lus10012277 [exp]	7.2	0.8857
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10016003 [exp]	7.4	0.8515
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	9.0	0.8993
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	9.2	0.8783
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10008951 [exp]	12.6	0.8853
AT3G52740			unknown protein		Lus10021366 [exp]	13.4	0.8526
AT2G35490			Plastid-lipid associated prote...		Lus10030987 [exp]	15.7	0.8765
AT5G50100			Putative thiol-disulphide oxid...		Lus10004232 [exp]	16.7	0.8472

Compare expression of checked genes

Lus10023663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.