Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51660 52 / 7e-09 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT3G21220 49 / 5e-08 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G18350 48 / 2e-07 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT1G73500 47 / 3e-07 ATMKK9 MAP kinase kinase 9 (.1) AT5G56580 47 / 3e-07 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT3G06230 44 / 4e-06 ATMKK8 MAP kinase kinase 8 (.1) AT1G32320 42 / 2e-05 ATMKK10 MAP kinase kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028999 [exp] 93 / 2e-25 AT3G21220 99 / 3e-25 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Lus10023665 [exp] 61 / 1e-13 ND / Lus10003677 [exp] 57 / 2e-11 AT3G21220 102 / 3e-27 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Lus10035764 [exp] 50 / 5e-08 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10001081 [exp] 45 / 2e-06 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10040128 [exp] 43 / 7e-06 AT1G73500 186 / 1e-59 MAP kinase kinase 9 (.1) Lus10034986 [exp] 42 / 3e-05 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10012938 [exp] 42 / 4e-05 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249300 [exp] 52 / 4e-09 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.008G009800 [exp] 52 / 8e-09 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.015G030700 [exp] 45 / 2e-06 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.018G068500 [exp] 42 / 1e-05 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.001G138800 [exp] 42 / 2e-05 AT1G32320 231 / 7e-75 MAP kinase kinase 10 (.1) Potri.008G183700 [exp] 39 / 0.0004 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023664 pacid=23148283 polypeptide=Lus10023664 locus=Lus10023664.g ID=Lus10023664.BGIv1.0 annot-version=v1.0 ATGTCGTCCAATCTACTGATGAAAGGACACGTGGTGAAGATTGCGGATTTCGGGAGGAGCAGGTACCTGTCAACTTTAAGGGACCGAGATGGGTTTATGG ATACGATTTTGTATCTGAGCCCCGAGAGGATTGACGTGTTTTCACCCAAATCGTCGGAGTGGTTCTTCCCCTCGGATGTCTTAGGATTTAGGATGAGTGT CTTGGAGGTGCACTTGAGAACGTATCTGATTGGTGGAGTGCCGCTGGTGAAGTACGGGGAATGCCTTACCCTAAAGAAGGCGATTTGTGAGGGGGCGCTG CCTAGTGCGCCACTTTCTGCGCGAGGAGTTTTGTGA
AA sequence Show only first row Show all	>Lus10023664 pacid=23148283 polypeptide=Lus10023664 locus=Lus10023664.g ID=Lus10023664.BGIv1.0 annot-version=v1.0 MSSNLLMKGHVVKIADFGRSRYLSTLRDRDGFMDTILYLSPERIDVFSPKSSEWFFPSDVLGFRMSVLEVHLRTYLIGGVPLVKYGECLTLKKAICEGAL PSAPLSARGVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10023664 [exp]	0	1
					Lus10023665 [exp]	1.0	0.9706
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10024614 [exp]	12.8	0.9265
AT2G14095			unknown protein		Lus10012704 [exp]	14.0	0.9220
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10028311 [exp]	23.0	0.9250
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	26.8	0.9205
AT3G15260			Protein phosphatase 2C family ...		Lus10005405 [exp]	32.7	0.9215
AT1G09490			NAD(P)-binding Rossmann-fold s...		Lus10026153 [exp]	35.1	0.8904
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	35.5	0.9187
					Lus10006284 [exp]	40.0	0.9104
AT4G18220			Drug/metabolite transporter su...		Lus10043396 [exp]	41.1	0.9071

Compare expression of checked genes

Lus10023664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.