Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06880 219 / 5e-59 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G16750 53 / 1e-06 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT4G25440 52 / 2e-06 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT1G21650 50 / 6e-06 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT1G21651 50 / 9e-06 zinc ion binding (.1) AT4G34380 48 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G51980 48 / 3e-05 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G50390 47 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 45 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 45 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034937 [exp] 1548 / 0 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013551 [exp] 620 / 0 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017257 [exp] 571 / 0 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10036201 [exp] 114 / 9e-26 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038340 [exp] 102 / 4e-22 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039197 [exp] 96 / 5e-20 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10013745 [exp] 90 / 4e-18 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10021014 [exp] 55 / 2e-07 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10008402 [exp] 50 / 7e-06 AT5G21040 658 / 0.0 F-box protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083600 [exp] 1068 / 0 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G240100 [exp] 649 / 0 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G021600 [exp] 607 / 0 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G220800 [exp] 235 / 2e-64 AT3G06880 1115 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G117300 [exp] 120 / 1e-27 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G118600 [exp] 105 / 5e-23 AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G214100 [exp] 96 / 5e-20 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.019G066500 [exp] 51 / 3e-06 AT1G21651 716 / 0.0 zinc ion binding (.1) Potri.012G134800 [exp] 51 / 3e-06 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.015G137200 [exp] 50 / 6e-06 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10023666 pacid=23148312 polypeptide=Lus10023666 locus=Lus10023666.g ID=Lus10023666.BGIv1.0 annot-version=v1.0 ATGTCGGAAATACTCGACGAATCGGAGGCGGCTGTGTTGAGGATACAGAAGTTCTGGCAGGAAGGGAAGAACTTATTAGGGTTTGATGTTCAGAGCATGT TAGCTAGGCCGGCTGTTGTGAGTGGATTCGTCGAGATCTTGTTCAATTCCGTCGATCCGACGGTTCTGAGAGCTACCGTGTTTCTGTTATCCGAATTGGG GTCCCGAGATAAATCGGTTACCCAGACGTTGACCAGGGTTGACTCCGACGTTGACTGCATAGTTGCTCTTTTCAAAAAAGGACTTCTGGAAGCTGTGGTG TTGATCTATCTCCTGAGGCCTTCTCCAGGGAGCTTGATGGAGATGGAAATGGTGGATTCTTTGGTAGCTGTGATGAAGAGGAAAGAGAGTGATCATATGG TGATGAAGATGTGCATGAAGCCCAGAACGGCGGCGGTTCTTCTGTTAGGCCAGATGCTGGGGAATGGTGATGAAGAAAGTGTCATTGTGGCTGACGTGGC GAAAAAAGTCGTCAAGGATGCTGACGTTGTGGGGAGTGTTGTTGGGAGCTTGGAATCTGACTGGACCGAGGAGAGGATCTCTGCAGTTGGGGTGTTGCTC AAGTGTATGCAAGTTGATGGGAGATGTAGGAATGATGTTGCTGATAAGGCTGAACTGGCTAATGTATTGGAGAGCTTTGTTAAAGGTAATGATGTTGAAA GGTTCCAGATCGTTCGTTTCCTTTCCGAATTGGTCAAACTCAACCGGAGAACGTTTAACGAGCAAGTGCTTCACATAATCAAGGATGAGGGAAAATTCAG CACAATGCATACTTTCCTTAGTTATTTGCAGACTGCTCCTGTGGATCAATCTCCTGTTCTAGCTGGCCTACTTTTCCAACTAGATCTTCTGGCTGAGCCA CGAAAGATGAGCATGTATAGGGAAGAAGCAATGGACACGTTGATTTCGTGCCTTAGGGATTCGGAGTCTCCTGCTGCGCAAATTGCTGCTGCGAGGACCA TTGTATCATTGCCAGGGAGGTTTACTGCCTCAGGGAAGTCCCTTACCAGAGCGTTTCTACTGAAGCGTGCTGGAATCGAGAAGAGTTTTCGAAACCTTGT CCAGATGGATCAGTCTGGAAACTTTTTTGCTGAAACTGAAGAGCTAGAAGAGAGAGCAGCTGAGGAATGGGGGCTGAAAATGGCGTCTGCGATAGTGAGC CATGAGTTTGGACTTATCTTTGAGGCATTAGCTGAAGGGATGAAGAGTCGATACTCAGAGCTTCATTCAGCTTGCTTCGTTTCGGCAGTATGGCTGGTGT ATATGTTAGGTGTTCTTCCCGACACTGGGATTCGAGGAGCAGCTCGAGTCTGCTTGCTCAAGCGCTTTGTATCCATCTTCAAGTCGGCCAAAGATATGGA CGATAGAGTCCTGGCATTGCTTGCTCTCAAGAGCTTTATCAAAGATCCTGAGGGGCTCCAGGAGCTCAATAACTACATGAAAGATCTGAAGAAAGGGCTA AGAGAGTTGAGGAAGTCATGCCCATTGGCATTTGAAATTCTCAAGGTTTTCTCTGAGGGACGAGACAGTAGTGCTGACCTGTGGAATCATAAAGAACTTG TTCAGGTAGATTGTTGCGAGAATGGAGAGGTGCTGTCAATTGCATACTTCAAGGACAAGATCATTTCAGGCCACTCAGATGGAACGATGAAGGTATGGAC TGGGCGAGGCAGCATTCTTCATCTTATCCAAGAAATCAGAGAACATTCCAAGGCAGTCAGTAGCTTGGTGGTTCTGCAATCAGGAGACAAGCTATACAGT GGTTCACTGGATAAAACTACCAGGGTTTGGTCCATAGTCAGCGACACACTGACCTGCATTCAAGTCCACGATATGAAGGAACAAGTTCATAACCTGGTGG TTGCTAGCAGCATTTCTTGCTTCATCCCAGCAGGAGCCGGCATCAAGGTTCATTCCTGGAGCGGCAGATCCAAATTAATCAACTCAGGGAGATACGTAAA GTGCTTATCTTTAGTTCAGGGAAAACTTTACTGTGGCTGCCATGACAATAGCATTCAGGAAATTGATTTGGCGACAGAAACAGTATCCTGCATTCAAACT GGATCCAGGAAACTTCTAGGGAAAGTAAGCCCCGTATATGCGCTGGAGGTTCGGGATGGGCTTGTGTATTCAGCAGTTTCACCCTTGGATGGATCGCCAG TTAAGATATGGAGTGCTTCGAATCATGAGCTGGTGGGATCATTGTCGACGACAATGGAGGTGAGGACAATGGCTATAAGTACAGAGCTGATATATCTGGG AGGCAAAGTTGGGGCAATAGAGATCTGGGATCGAAAGAAGCGCAATAGGGTCGAAACCATACAAGCTTGCACTAACAGCAGAGTTGTTTCCATGGCTGTG GATGGTAATGAGGAGATATTAGTTGCTGGAACTTCAGATGGATGGATTCAGGTGAGCTCATCATCATGCAATTAG
AA sequence Show only first row Show all	>Lus10023666 pacid=23148312 polypeptide=Lus10023666 locus=Lus10023666.g ID=Lus10023666.BGIv1.0 annot-version=v1.0 MSEILDESEAAVLRIQKFWQEGKNLLGFDVQSMLARPAVVSGFVEILFNSVDPTVLRATVFLLSELGSRDKSVTQTLTRVDSDVDCIVALFKKGLLEAVV LIYLLRPSPGSLMEMEMVDSLVAVMKRKESDHMVMKMCMKPRTAAVLLLGQMLGNGDEESVIVADVAKKVVKDADVVGSVVGSLESDWTEERISAVGVLL KCMQVDGRCRNDVADKAELANVLESFVKGNDVERFQIVRFLSELVKLNRRTFNEQVLHIIKDEGKFSTMHTFLSYLQTAPVDQSPVLAGLLFQLDLLAEP RKMSMYREEAMDTLISCLRDSESPAAQIAAARTIVSLPGRFTASGKSLTRAFLLKRAGIEKSFRNLVQMDQSGNFFAETEELEERAAEEWGLKMASAIVS HEFGLIFEALAEGMKSRYSELHSACFVSAVWLVYMLGVLPDTGIRGAARVCLLKRFVSIFKSAKDMDDRVLALLALKSFIKDPEGLQELNNYMKDLKKGL RELRKSCPLAFEILKVFSEGRDSSADLWNHKELVQVDCCENGEVLSIAYFKDKIISGHSDGTMKVWTGRGSILHLIQEIREHSKAVSSLVVLQSGDKLYS GSLDKTTRVWSIVSDTLTCIQVHDMKEQVHNLVVASSISCFIPAGAGIKVHSWSGRSKLINSGRYVKCLSLVQGKLYCGCHDNSIQEIDLATETVSCIQT GSRKLLGKVSPVYALEVRDGLVYSAVSPLDGSPVKIWSASNHELVGSLSTTMEVRTMAISTELIYLGGKVGAIEIWDRKKRNRVETIQACTNSRVVSMAV DGNEEILVAGTSDGWIQVSSSSCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06880			Transducin/WD40 repeat-like su...		Lus10023666 [exp]	0	1
AT2G28830		AtPUB12	PLANT U-BOX 12 (.1)		Lus10023667 [exp]	2.6	0.8111
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	2.6	0.8406
AT4G16563			Eukaryotic aspartyl protease f...		Lus10028941 [exp]	2.8	0.8257
AT5G38200			Class I glutamine amidotransfe...		Lus10009152 [exp]	4.9	0.8325
AT1G71140			MATE efflux family protein (.1...		Lus10008911 [exp]	6.0	0.8172
AT3G06880			Transducin/WD40 repeat-like su...		Lus10034937 [exp]	6.3	0.8089
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026944 [exp]	11.8	0.7772
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10015076 [exp]	13.9	0.7556
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	14.3	0.8302
AT5G47070			Protein kinase superfamily pro...		Lus10040135 [exp]	18.4	0.7496

Compare expression of checked genes

Lus10023666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.