Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28830 86 / 3e-17 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 84 / 1e-16 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G23030 82 / 3e-16 PUB11 ARM repeat superfamily protein (.1) AT5G42340 81 / 6e-16 PUB15 Plant U-Box 15 (.1) AT1G71020 81 / 7e-16 ARM repeat superfamily protein (.1.2) AT3G54850 81 / 9e-16 ATPUB14 plant U-box 14 (.1) AT2G23140 78 / 6e-15 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G49780 77 / 7e-15 PUB26 plant U-box 26 (.1) AT3G54790 77 / 2e-14 ARM repeat superfamily protein (.1.2) AT1G27910 76 / 3e-14 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034937 [exp] 692 / 0 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013551 [exp] 122 / 1e-28 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017257 [exp] 122 / 1e-28 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013745 [exp] 92 / 4e-19 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10039197 [exp] 91 / 1e-18 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10038699 [exp] 86 / 1e-17 AT3G54850 599 / 0.0 plant U-box 14 (.1) Lus10016565 [exp] 87 / 2e-17 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 86 / 2e-17 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10040834 [exp] 86 / 2e-17 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083600 [exp] 284 / 9e-84 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G240100 [exp] 128 / 6e-31 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G021600 [exp] 118 / 2e-27 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G214100 [exp] 96 / 1e-20 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.001G012300 [exp] 93 / 1e-19 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.001G238500 [exp] 92 / 2e-19 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G226500 [exp] 88 / 4e-18 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.008G035700 [exp] 87 / 6e-18 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 87 / 8e-18 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G113900 [exp] 87 / 1e-17 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10023667 pacid=23148331 polypeptide=Lus10023667 locus=Lus10023667.g ID=Lus10023667.BGIv1.0 annot-version=v1.0 ATGGAGAACCCTACTACAACCACTTCTTCCGCCGACATCGCAATATCACCGGAAATAATCCTCCACCACACGACCTCTTTCCTCTCCAAAACAATCTCGG AGCCGGAACTCCGCAGCCACCTCTTCGCCGTCCTCCATGACGGCGGCAAAACCCACTTCGCCGCCCGTTTCACCTCCTCCGCCGCCCTCCTCCTCAAGCC CCACAGCCTCGCATTGGAAGCCGTGGAGAAAGCAATTGCCGCCACAAACCTCTCCGTACAGTCCTCTTCTTTGTCCGTGGCATTGAAGCTCCTCCTCTCA TGCCCAAACACTCCTTTCTCTTCGTTCCTCCTCTCACTTATATATTCTCTAATCCACCAGCCTTCCAAGGCCGCCGAAAGCCTCATCTTCCTCTTCTGCC TCAACCCGTCCGCCGCGAGATCGAAAATCGCTCCGGTGATCTTCGAGGAGCTCTTCTTCGTCCATCTCCTCCCTGTTTTTCAGTGGTTCGAGGAACAGAG GAACGGAATTCTCTCGAATTCGGGCTCGAGCGGTGATGACTCGGCCGCTTCCGGTGGGGAAGGATCGTTGGTGAGGACGAAGGTGCTTTCGAAGATGAAT GGTGGGCAGGCCAAGGAGTTAACGGAGCTGGAGAGTATGTATGAGGAGGTTCTTAATGAGAATTGTAGAGTTTTTGCTAATTATTTTATTGAGGTTTTGA GAAGCAGCGGAGGAGAAGTGTCGGTTGGGGCGCCGCCGGCGGTGGTGTTGAAGGACTTGAGGAGAGATGGATTGCAGCAGGGGAAGAAAGGGAGTGGAGA GGCAGGGGATTTTGGCGCGCAATTCGGACGGTGGGGTGAGCATTGGATCGGTGAGAGACAGCCGATATGGAATGAAAGAAGACAAGGATGTTTATCAGAA ACCTGCAGTCCATTTGGCACCTCCACCACTAAATCCACTTGTTCATCGCCCCTCCGTGTTTCTCCTCAATCACCACTTCCTCCTCCTCTTCCTGCCAACA GTACTAACAATCTTCGGCAGACTGCAAATTCTGATTCAGAGGATACAACCTTCTCTTCATATTCTGCTTCTTCTTCCTCTGATCCTCCACTCACGGAAAC CAACAAAACAGCCGCATTGTTCAACTCTGCAACTCATATCTTGCCCAACACTAAACAACAACTCCACATTGCTACACCTCTTCCCAGACGTTCTTCTCCA GGTAAGAACCAGACCCTAATGGCAGATTTCGACACTCTGCCTAGCATTAATGGCGGACACCACCAAATCACTCCACCGCCAAAGGACTTCGTCTGCCCAA TCACAACCAACATCTTCACCGATCCAGTCACCTTAGAGACCGGTCAAACCTACGAGCGTAAAGCGATTCAGGAATGGCTAGATCGAGGCAACTCAACTTG TCCAATCACCCGCCAGAAATTGACGGGAACTCTCCTCCCCAAAACAAACTACGTCCTCAAGCGGCTAATCGCCTGCTGGCTCGAGAACAATCCTGCATCT AACCGACCGGAAACTCCTCCTTTAAACAACAACACTACTACATCAGCCTCCTCTCCCAACAGCGTCATCGCCGCGGCCGCCGTACTACATCAGCCTCCTA TCCCAACAGCGTCATCGCCGCGGCCGCCGTCGATTGCTCCATCGGCCAGCTCCGGCACGCTATAA
AA sequence Show only first row Show all	>Lus10023667 pacid=23148331 polypeptide=Lus10023667 locus=Lus10023667.g ID=Lus10023667.BGIv1.0 annot-version=v1.0 MENPTTTTSSADIAISPEIILHHTTSFLSKTISEPELRSHLFAVLHDGGKTHFAARFTSSAALLLKPHSLALEAVEKAIAATNLSVQSSSLSVALKLLLS CPNTPFSSFLLSLIYSLIHQPSKAAESLIFLFCLNPSAARSKIAPVIFEELFFVHLLPVFQWFEEQRNGILSNSGSSGDDSAASGGEGSLVRTKVLSKMN GGQAKELTELESMYEEVLNENCRVFANYFIEVLRSSGGEVSVGAPPAVVLKDLRRDGLQQGKKGSGEAGDFGAQFGRWGEHWIGERQPIWNERRQGCLSE TCSPFGTSTTKSTCSSPLRVSPQSPLPPPLPANSTNNLRQTANSDSEDTTFSSYSASSSSDPPLTETNKTAALFNSATHILPNTKQQLHIATPLPRRSSP GKNQTLMADFDTLPSINGGHHQITPPPKDFVCPITTNIFTDPVTLETGQTYERKAIQEWLDRGNSTCPITRQKLTGTLLPKTNYVLKRLIACWLENNPAS NRPETPPLNNNTTTSASSPNSVIAAAAVLHQPPIPTASSPRPPSIAPSASSGTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28830		AtPUB12	PLANT U-BOX 12 (.1)		Lus10023667 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020332 [exp]	2.4	0.8074
AT3G06880			Transducin/WD40 repeat-like su...		Lus10023666 [exp]	2.6	0.8111
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10016377 [exp]	4.6	0.7609
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Lus10043383 [exp]	4.7	0.7507
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10035178 [exp]	13.4	0.7509
AT2G15220			Plant basic secretory protein ...		Lus10026576 [exp]	14.1	0.7751
					Lus10036026 [exp]	16.2	0.7044
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033364 [exp]	25.3	0.7596
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10003492 [exp]	26.4	0.7743
AT4G14368			Regulator of chromosome conden...		Lus10027273 [exp]	29.7	0.7531

Compare expression of checked genes

Lus10023667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.