Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28940 358 / 5e-123 Phosphorylase superfamily protein (.1) AT4G24350 207 / 6e-64 Phosphorylase superfamily protein (.1.2) AT4G24340 196 / 1e-59 Phosphorylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034939 [exp] 543 / 0 AT4G28940 359 / 4e-124 Phosphorylase superfamily protein (.1) Lus10028834 [exp] 176 / 1e-48 AT3G10540 817 / 0.0 3-phosphoinositide-dependent protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G161538 [exp] 400 / 3e-139 AT4G28940 457 / 2e-162 Phosphorylase superfamily protein (.1) Potri.008G028500 [exp] 216 / 2e-67 AT4G24350 418 / 2e-147 Phosphorylase superfamily protein (.1.2) Potri.008G028700 [exp] 206 / 2e-63 AT4G24350 436 / 3e-154 Phosphorylase superfamily protein (.1.2) Potri.008G028600 [exp] 201 / 1e-61 AT4G24350 429 / 2e-151 Phosphorylase superfamily protein (.1.2) Potri.019G050200 [exp] 139 / 7e-38 AT4G24340 159 / 6e-46 Phosphorylase superfamily protein (.1) Potri.013G082700 [exp] 130 / 8e-35 AT4G24340 179 / 1e-53 Phosphorylase superfamily protein (.1) Potri.013G081233 [exp] 125 / 4e-33 AT4G24340 201 / 4e-62 Phosphorylase superfamily protein (.1) Potri.013G082800 [exp] 125 / 4e-33 AT4G24340 201 / 4e-62 Phosphorylase superfamily protein (.1) Potri.013G082066 [exp] 125 / 6e-33 AT4G24340 201 / 6e-62 Phosphorylase superfamily protein (.1) Potri.013G101000 [exp] 124 / 3e-32 AT4G24340 133 / 5e-36 Phosphorylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0408 [flax] [poplar] PUP PF01048 [flax] [poplar] PNP_UDP_1 Phosphorylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10023668 pacid=23148391 polypeptide=Lus10023668 locus=Lus10023668.g ID=Lus10023668.BGIv1.0 annot-version=v1.0 ATGAAGAATTCCACTCTCTGTTTGGTTGTTTTGTTCCTACTGTGGAATAACACAACTACTACTGAAGCAGCAGTTGCATCAGGTGACCTTGTCAAAATCC ATGGAATCAACCAGTTGGGTCATTATTTGGGAATCGTTGTGCCAAATATGTTCGAGATGAACCCCCTCCTTCAATCAAATACATTCGTCCCGGATCCGAC AACTCCTTGGCTCGACATTCTGGGGAGAAGATTCAGGATAGGAAAGGTGGGAAACAAGAAGGTTATCATTGTAATGACAGGATTAAGCATGATAAATGCA GGGATCACTACGGAGTTGCTTTTGACACTGTTCAACCTGGAAGGTGTTCTTCACTATGGAATTGCTGGGAATGCAAATCCAAAGTTTGAGATAGGAGATG TCACAATCCCTCAGTACTGGACTCATTCTGGCCTCTGGCTTTGGGCAGGGCCAAATGACAGTCTACCATTGGAATCAAATGGAGACTACACCAGAGAAAT CGGTCTCCTTAGATTCGCAGACTACAATACTGGCAATGGATCGGACAACCTACTGAACAATGTTTGGTATCAACCTGAGGAGATATTTCCGGTGAACGGA ATTCCTGAAGTCAGACAACATATATTCAAGGTTCCCGTCGATTCGCGTTATCTGCATGTCGCAAAAATTGTCGAGGTAAAATTGTGTGGGTTTGTGAAGT TTCATTTCGTCGCAACTGTTTCTTCAGCCCAGTCAATGGCGGAATGGAATCAGGGTGGCCAATTTTGGCTACCAGCCAGGAAAAAAGGTCTGAGCTTGGA GAGATGCGTGAATTCAACGACTTGTTTGCCAAAAACACCGGTGACGGCGACGGTGGAAATGGGAGTGAGCGGAAGTGTGTTCGTAGACAACAAGGCCTAC GCAGATTTCTTGCACTCAAAGTTCAACGCCACTGCGATTGATATGGAGAGTGCTGCCGTAGCGCTGGTGTGTTACCAGCAGAGGATCCCTTTTATTGCCA TCAGAGCTCTCTCCGACTTGGCTGGCGGTGGCTCTGCTCTTTCAAACGAAGCTGACGCTTTTGCTCCCTTGGCTGCTAGCAACGCCGTGCGAGTCTTGCT TAGCTTCATTTCTTCCTTATAG
AA sequence Show only first row Show all	>Lus10023668 pacid=23148391 polypeptide=Lus10023668 locus=Lus10023668.g ID=Lus10023668.BGIv1.0 annot-version=v1.0 MKNSTLCLVVLFLLWNNTTTTEAAVASGDLVKIHGINQLGHYLGIVVPNMFEMNPLLQSNTFVPDPTTPWLDILGRRFRIGKVGNKKVIIVMTGLSMINA GITTELLLTLFNLEGVLHYGIAGNANPKFEIGDVTIPQYWTHSGLWLWAGPNDSLPLESNGDYTREIGLLRFADYNTGNGSDNLLNNVWYQPEEIFPVNG IPEVRQHIFKVPVDSRYLHVAKIVEVKLCGFVKFHFVATVSSAQSMAEWNQGGQFWLPARKKGLSLERCVNSTTCLPKTPVTATVEMGVSGSVFVDNKAY ADFLHSKFNATAIDMESAAVALVCYQQRIPFIAIRALSDLAGGGSALSNEADAFAPLAASNAVRVLLSFISSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28940			Phosphorylase superfamily prot...		Lus10023668 [exp]	0	1
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	3.2	0.8973
AT5G58850	MYB	ATMYB119	myb domain protein 119 (.1)		Lus10018220 [exp]	4.6	0.9045
AT4G26530			Aldolase superfamily protein (...		Lus10005849 [exp]	7.3	0.8838
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	9.2	0.8809
					Lus10032375 [exp]	12.3	0.8748
AT4G26530			Aldolase superfamily protein (...		Lus10032956 [exp]	12.4	0.8788
AT4G26530			Aldolase superfamily protein (...		Lus10005850 [exp]	14.1	0.8779
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10008861 [exp]	14.1	0.8731
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10020785 [exp]	14.2	0.8776
					Lus10030762 [exp]	17.7	0.8738

Compare expression of checked genes

Lus10023668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.