Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29100 211 / 2e-64 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 187 / 6e-56 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G27660 122 / 9e-31 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G20640 119 / 1e-29 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 117 / 2e-29 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT3G19500 114 / 3e-29 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31730 100 / 3e-25 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 97 / 6e-24 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G05170 93 / 1e-21 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G31050 92 / 3e-20 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034940 [exp] 386 / 4e-134 AT4G29100 171 / 4e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011105 [exp] 153 / 7e-46 AT4G29100 126 / 4e-36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038550 [exp] 128 / 1e-32 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 125 / 1e-32 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 124 / 2e-32 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 118 / 5e-30 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010638 [exp] 115 / 2e-28 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027064 [exp] 100 / 1e-25 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10025599 [exp] 99 / 5e-25 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083700 [exp] 244 / 3e-78 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 187 / 2e-56 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 184 / 2e-55 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 136 / 1e-35 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 134 / 5e-35 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.002G032400 [exp] 124 / 1e-31 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G410600 [exp] 122 / 7e-31 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G094300 [exp] 117 / 3e-30 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G129500 [exp] 119 / 5e-30 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G230800 [exp] 117 / 3e-29 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023669 pacid=23148304 polypeptide=Lus10023669 locus=Lus10023669.g ID=Lus10023669.BGIv1.0 annot-version=v1.0 ATGAATCAAGGTGGCCATGTTTTGCAACAGAACCCTAACTGGTGGATCACCAGTACCATGAGGCCACCCCTTTCATCTTCTTCATCTTCTTCTTCTTCTT CTTCTTCTTCCTCATCCTCTTCACTTCCTTTCCCTTCTTGTCATGAACACACTAACACTACTAACGAAGATCATCGACTACCCGATTCGTGGAGACTTCT CCTGGGAGATGAAGGCAAGATGAGCAATTTCCAAGAGGCAAGCAAGAGGTTTGATAGCTTTTACCAAGATCATCACCAGCAACTGTTCAACACTAGTATT AATGGATGTTCGTCGTCGTTACCGGATGTGAAGCAAGAGAGCTCTGGAACTGCAACTACTTATGTTAGTAGTAGCTACGGACACGATCATCATCAGCATG CAACTGAGGAGTATAATCATCAAGCTTCAGCTAATAACAATTGGCCTCATCACCAATTCATTGCTAATAACAACTCATCATCTCCTAACTCCACAAGTTT CATGGATTTCTCAGCTATCAGCAGCCACCACCCGCCTCCCCCGCCTCTGCTCGATCCATCATCATCTGAGATGAACAGCTCTACTGGAGCTGCTGCTGCT GGTGGTGCTGCTGGTGGTGGTGGTGGTGGAGGTGGGGCACCAAAGAAAGCTAGGGTTCAAGCTTCTTGTTCTTCTTCATCCCAATCTACCATTAAGGTTA GAAAGGAGAAACTGGGAGATAGAATCACATCACTTCATCAGCTGGTGTCTCCATTTGGCAAGACTGACACAGCTTCTGTCTTGTTAGAAGCTGTTGGGTA CATTAGATTCCTTCAAAGCCAAATAGAGGCTCTGAGCATGCCTTACTTAGGCAGTGGAAGCACGAACATGAGGCGCCCTCACCATCAACACCTACGTTCT GTTCCAGGAGAAAGGAGTTGTGTGTTCCCAGAGGACCCTGGTCAGCTCTTGGATGATAGCTGTCTGAAGAGGAAAGCACTTTCTGATCAACAACAGGAAT TTGATGAGGCGCCAAAGAAGGATTTAAGGAGTAGAGGGCTGTGCCTAGTGCCAGTCTCCTGCACTACGCAAGTTGGTAATGAGAATGGAGCTGATTACTG GGCTCCTACACTCGGTGGAGGGTTCCGGTGA
AA sequence Show only first row Show all	>Lus10023669 pacid=23148304 polypeptide=Lus10023669 locus=Lus10023669.g ID=Lus10023669.BGIv1.0 annot-version=v1.0 MNQGGHVLQQNPNWWITSTMRPPLSSSSSSSSSSSSSSSSSLPFPSCHEHTNTTNEDHRLPDSWRLLLGDEGKMSNFQEASKRFDSFYQDHHQQLFNTSI NGCSSSLPDVKQESSGTATTYVSSSYGHDHHQHATEEYNHQASANNNWPHHQFIANNNSSSPNSTSFMDFSAISSHHPPPPPLLDPSSSEMNSSTGAAAA GGAAGGGGGGGGAPKKARVQASCSSSSQSTIKVRKEKLGDRITSLHQLVSPFGKTDTASVLLEAVGYIRFLQSQIEALSMPYLGSGSTNMRRPHHQHLRS VPGERSCVFPEDPGQLLDDSCLKRKALSDQQQEFDEAPKKDLRSRGLCLVPVSCTTQVGNENGADYWAPTLGGGFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	0	1
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10034940 [exp]	1.0	0.9032
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10007898 [exp]	1.7	0.8983
AT4G32140			EamA-like transporter family (...		Lus10026249 [exp]	2.0	0.8999
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10003488 [exp]	3.5	0.8907
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	4.5	0.8959
AT3G27390			unknown protein		Lus10032110 [exp]	4.5	0.8909
AT3G19340			Protein of unknown function (D...		Lus10031975 [exp]	8.0	0.8876
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001416 [exp]	8.2	0.8766
AT1G04780			Ankyrin repeat family protein ...		Lus10011743 [exp]	8.4	0.8774
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10022797 [exp]	9.0	0.8605

Compare expression of checked genes

Lus10023669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.