Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13930 694 / 0 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT4G34850 300 / 5e-98 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT4G00040 295 / 4e-96 Chalcone and stilbene synthase family protein (.1) AT1G02050 274 / 7e-88 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT3G52160 59 / 4e-09 KCS15 3-ketoacyl-CoA synthase 15 (.1) AT4G34520 59 / 4e-09 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT1G71160 57 / 2e-08 KCS7 3-ketoacyl-CoA synthase 7 (.1) AT4G34510 57 / 2e-08 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G16280 57 / 2e-08 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT4G34250 54 / 1e-07 KCS16 3-ketoacyl-CoA synthase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031622 [exp] 560 / 0 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 558 / 0 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 546 / 0 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 480 / 1e-169 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 455 / 2e-161 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011744 [exp] 311 / 7e-106 AT5G13930 283 / 4e-96 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 306 / 2e-100 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 300 / 5e-98 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 296 / 2e-96 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051600 [exp] 739 / 0 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 738 / 0 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 728 / 0 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 726 / 0 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 716 / 0 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 712 / 0 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.012G138800 [exp] 548 / 0 AT5G13930 531 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G028600 [exp] 505 / 5e-179 AT5G13930 510 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.005G175200 [exp] 416 / 7e-145 AT5G13930 425 / 2e-149 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.002G141400 [exp] 303 / 1e-98 AT1G02050 618 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00195 [flax] [poplar] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023670 pacid=23148360 polypeptide=Lus10023670 locus=Lus10023670.g ID=Lus10023670.BGIv1.0 annot-version=v1.0 ATGGGTTGTGAAGGAGTTTTCGGGTCGGGTCACTCGTCCCGTCACCCAAAGATAAGAAAGGCCTTCTGCTTAAACCCTCAACCTCGGCCCAACTTCAACC CTGATCCATTGAGTGAAACTGAAAGAGACTCGAAAGTGTGCAGCAAGGCCTTGCAGGCTGGAAAGCCCCGCCTCTTGTCGGTTGCCAGTAGCACAGGAGG AGAGGTAACATTGAAGATGTCGACCATCACCGTTGATGAAGTACGCAAGGCTCAACGTGCACAAGGTCCCGCCACCGTCCTTGCCATCGGAACCGCCACT CCTGCCAACTGCGTCGATCAAAGCACCTACCCTGATTACTACTTCCGTATTACCAACAGCGAGCACAAGACTGAGCTCAAGGAGAAGTTCAAGCGCATGT GCGAGAAGTCGATGATCAAGAAACGTTACATGCACTTGACGGAAGAGTTCCTCAAGGAGAATCCGACCATGTGTGCCTACATGGCAAATTCCCTCGACGC TCGCCAAGACGTCGTCGTCCCGGAAGTTCCGAAGCTAGGAAAAGAAGCTGCTACAAAAGCCATCAAGGAATGGGGACAGCCCAAATCCAAAATCACCCAC CTCATCTTCTGCACCACCAGTGGGGTCGACATGCCTGGCGCCGACTACCAGCTCACCAAGCTGTTGGGCCTCCGTCCCTCGGTGAAGCGCTTCATGATGT ACCAACAAGGCTGCTTCGCCGGCGGCACCGTCCTACGCCTCGCCAAGGACCTTGCCGAGAACAACAAGGGTGCACGCGTCCTCGTCGTGTGTTCCGAGAT TACCGCCGTCACCTTCCGTGGGCCGAGTGATGCCCATCTCGACAGTCTCGTGGGCCAGGCCTTGTTCGGCGACGGAGCGGCTGCTGTCATAGTGGGGTCG GACCCAAATCTCGAGATTGAAAAGCCCATGTTTGAAATTGTGTCCACAGCCCAGACCATCCTGCCCGATAGTGAAGGTGCTATCGACGGACACCTTCGGG AAGTGGGGTTGACTTTCCACCTTCTGAAAGATGTCCCCGGGCTGATTTCGAAGAACATTGAGAAGAGCTTGGTGGAGGCGTTTAAGCCGTTGGGGATATC GGACTGGAACTCGCTTTTCTGGATAGCTCATCCGGGTGGTCCGGCGATTCTGGACCAAGTGGAGGCTAAGTTGAACCTCAAGGAGGAGAAACTGCGAGCC ACGAGGCAGGTTCTGGCTGATTATGGTAACATGTCGAGTGCTTGTGTGTTGTTCATATTGGATGAGATGAGGAAGAAATCTGTTGCGGATGGGTTGAACA CTACTGGTGAAGGGCTTGATTGGGGGGTTCTGTTTGGATTCGGGCCTGGACTCACTGTGGAGACTGTAGTTCTTCACAGTGTGGCTGTTTGA
AA sequence Show only first row Show all	>Lus10023670 pacid=23148360 polypeptide=Lus10023670 locus=Lus10023670.g ID=Lus10023670.BGIv1.0 annot-version=v1.0 MGCEGVFGSGHSSRHPKIRKAFCLNPQPRPNFNPDPLSETERDSKVCSKALQAGKPRLLSVASSTGGEVTLKMSTITVDEVRKAQRAQGPATVLAIGTAT PANCVDQSTYPDYYFRITNSEHKTELKEKFKRMCEKSMIKKRYMHLTEEFLKENPTMCAYMANSLDARQDVVVPEVPKLGKEAATKAIKEWGQPKSKITH LIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDAHLDSLVGQALFGDGAAAVIVGS DPNLEIEKPMFEIVSTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLNLKEEKLRA TRQVLADYGNMSSACVLFILDEMRKKSVADGLNTTGEGLDWGVLFGFGPGLTVETVVLHSVAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10023670 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011745 [exp]	1.0	0.9760
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10021158 [exp]	2.0	0.9353
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040526 [exp]	3.5	0.9352
AT4G02250			Plant invertase/pectin methyle...		Lus10008201 [exp]	4.0	0.8575
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041912 [exp]	7.5	0.9060
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	8.9	0.9031
					Lus10013260 [exp]	9.8	0.9031
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	10.6	0.9031
					Lus10005297 [exp]	11.3	0.9031
					Lus10035557 [exp]	12.0	0.9031

Compare expression of checked genes

Lus10023670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.