Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04790 200 / 3e-55 RING/U-box superfamily protein (.1) AT3G55530 79 / 5e-16 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT1G26800 69 / 4e-13 RING/U-box superfamily protein (.1) AT1G14200 67 / 8e-13 RING/U-box superfamily protein (.1) AT4G35840 66 / 7e-12 RING/U-box superfamily protein (.1) AT1G35630 67 / 1e-11 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT5G60820 67 / 1e-11 RING/U-box superfamily protein (.1) AT1G35625 65 / 1e-11 RING/U-box superfamily protein (.1) AT5G01980 67 / 2e-11 RING/U-box superfamily protein (.1) AT2G17730 65 / 2e-11 NIP2 NEP-interacting protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011747 [exp] 627 / 0 AT1G04790 185 / 2e-50 RING/U-box superfamily protein (.1) Lus10031422 [exp] 74 / 6e-14 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10004977 [exp] 72 / 2e-13 AT3G55530 371 / 1e-130 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10000513 [exp] 71 / 3e-13 AT3G55530 389 / 7e-138 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10002706 [exp] 71 / 4e-13 AT3G55530 382 / 5e-135 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10001568 [exp] 70 / 8e-13 AT3G55530 361 / 9e-127 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10016936 [exp] 69 / 7e-12 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10014823 [exp] 69 / 8e-12 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10006074 [exp] 68 / 1e-11 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176500 [exp] 457 / 6e-151 AT1G04790 264 / 2e-78 RING/U-box superfamily protein (.1) Potri.010G201500 [exp] 79 / 5e-16 AT3G55530 310 / 2e-106 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.009G034700 [exp] 76 / 1e-14 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.005G108200 [exp] 68 / 2e-12 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1) Potri.012G065300 [exp] 70 / 3e-12 AT5G08139 178 / 4e-51 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 67 / 3e-12 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 67 / 4e-12 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.001G435800 [exp] 67 / 4e-12 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) Potri.015G047900 [exp] 68 / 1e-11 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.013G111500 [exp] 66 / 4e-11 AT1G71980 427 / 5e-147 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10023671 pacid=23148390 polypeptide=Lus10023671 locus=Lus10023671.g ID=Lus10023671.BGIv1.0 annot-version=v1.0 ATGGACGAATTAGACATTGATAAGGTCATAGAAATACCTGATACTCCTGATAGGGTATCTGGGAGGCAAATCAATGGCTCTCACCTTGGTAGAACAACTG GCTCATCAATTGTCAGTGGTTCAAGAAATTCTGATATCATGAATATAGAGAGATTTAATCGGTTAGGGATCAGGAATCAGGTAGCAAATGAGAAAGTTTC TCATAGTAACAAGCATGCATGCCCTGAAAGAAATCCAATCATTATCGATGAACCTGAACCATGCAGCAAGCGTACTACATCCCATGCAGAGAACTCTCAT CCTTCTGAGAATGCTTTGTTATTCAGAAGAACAGCAAGGGTCGAAAATACCAGGCCTGGAAGTAGGCAATCTAAGGGAGCAACACATACGGACAAAGGAA AGGCTTTGTGTACCAAGATTCCTTCTAAATCCCATGTTGGCAGAGAAAATAAACCAAACATAAATTTGACCTTTCCGAGTGAGCATGGCCGCATACTAAA CATGGATTTTCCTTGTGGAGCATCGAATAGTCTGCCCTCTCATGCTAGAGGTAAGGGTCAAATGTCATCCAGTAGTGCCTCATCGCTGTCTCCTGTCTCC TCAAGAATACTTAACAGTGCTTCTAAAGGTAAGGAGAAAATAGAAGTTGGTCCAGTCAATGGTTCTTTTGCTACTTCAAATCCTGAGAGAGCAATTGATG TGTCCAGCAATTCTCAGCATGAAGCTAACGGGAATATGTCTACTTCGCATCCATCTGGTACCTCCTCAAGGGTCATAGGGAGAAAACGACTTGTGCGCAA TGGATGTATTTCTCCATATAACATAGCCAATAGGGCCCAACGACTAACTGAAGATTGCCAAGTTGGTTCTGGCAGTTCTGAAACAAATCCGCCCCATCAG ATTTCTTCCTATGATCCATCTCATGTGGATATCAGGAACATAGTTGCTGATGACAACGACACTTCCAGTTTCTTGCAGATGACACGCCGTAACCAGTCTA CTCGGAATGGACTTGTATCGGCAGCTAGCCGTGCATCTGCAAGCAGCCCGGTGTTTGGAAATGGTGTGGCCAATGCAGATAGCCTGATGAACAGAGGTAT GCAATTAGGCGGTTGGAGAGTGACTCGCAACAGAGATGCAATGCGAAGAAGTCCCACGCTTGTGTCTGCAACCAGTCAAACCAACGGACGTCAGGTTGTT GGGTCCAAAAGGTTAAGGAAACATCATGGTGAATCTTCGTCCTCAGTGCATGATGACTCGGATATTTTGTTTCTTGGTTCATCTCAAGGGTCATCCAGAC TTCAAGATCGTCAACATGATAGCTCTTTAAGACGTAATGAGTTGTCATTTGAAACTAGACGGCATGAAACTCAGGAAGTAGGTTTTGTGGATGCTGATGA ATTGGAAGCCAGGGCAAGGCAATTAGAAGCAGATGAGATGTTGGCTCGTGAACTTCAGGAACAATTGTACCATGAAATGCCAGTATACGGGGAAGGCGAG ACTGATGAGAGTATAGCATGGAATTGGGCAGTTCACCAGGAGGAAGATGTCCGCCCTAGTGCTTCCACCAATAATCAGCCTGCGTTACCTATGGGAAGGC AAACACAGCCTCGGGCTCAAGCACAGACCCGTCAGAATCCTCCAATCAGAAGAGGAACACAGGCTCGAGGACCCACTTCTAGAGTGTCACAGTTGAGGAA TCGTTTTAACCGTTCTATTACAAATGGACCGAGAAGGAGGACCCGTGTTCCTGTAAATTTATTTAGAGACAGGAATCTCCAGTTCCCTCTGGACATGGAT CTAGATATGAGGATTGATATTTTGGAAGCTTTGGAGGCTGCAGTTGGCGACTCAGATTTTGACACAAGACACATCATGAATCTTCAGCGTGATTTCAATG AAAATGATTATGATATGTTGTTGTCCCTTGATGAGAACAATGGACGTCAAGGTGCATCTGCCAATCAAATTAACTGTTTGCCAGAGTCTATAGTACAGTC GGACAACTTTGCTGAGAATTGTGCTATATGCCTTGAAACTCCTTCGATTGGTGAAACCATCCGTCATCTCCCTTGCTTCCATAAATTTCATAAAGATTGC ATTGATCCGTGGCTTGGAAGACAGAAGTCTTGTCCAGTGTGCAAATCATCCATTACATGA
AA sequence Show only first row Show all	>Lus10023671 pacid=23148390 polypeptide=Lus10023671 locus=Lus10023671.g ID=Lus10023671.BGIv1.0 annot-version=v1.0 MDELDIDKVIEIPDTPDRVSGRQINGSHLGRTTGSSIVSGSRNSDIMNIERFNRLGIRNQVANEKVSHSNKHACPERNPIIIDEPEPCSKRTTSHAENSH PSENALLFRRTARVENTRPGSRQSKGATHTDKGKALCTKIPSKSHVGRENKPNINLTFPSEHGRILNMDFPCGASNSLPSHARGKGQMSSSSASSLSPVS SRILNSASKGKEKIEVGPVNGSFATSNPERAIDVSSNSQHEANGNMSTSHPSGTSSRVIGRKRLVRNGCISPYNIANRAQRLTEDCQVGSGSSETNPPHQ ISSYDPSHVDIRNIVADDNDTSSFLQMTRRNQSTRNGLVSAASRASASSPVFGNGVANADSLMNRGMQLGGWRVTRNRDAMRRSPTLVSATSQTNGRQVV GSKRLRKHHGESSSSVHDDSDILFLGSSQGSSRLQDRQHDSSLRRNELSFETRRHETQEVGFVDADELEARARQLEADEMLARELQEQLYHEMPVYGEGE TDESIAWNWAVHQEEDVRPSASTNNQPALPMGRQTQPRAQAQTRQNPPIRRGTQARGPTSRVSQLRNRFNRSITNGPRRRTRVPVNLFRDRNLQFPLDMD LDMRIDILEALEAAVGDSDFDTRHIMNLQRDFNENDYDMLLSLDENNGRQGASANQINCLPESIVQSDNFAENCAICLETPSIGETIRHLPCFHKFHKDC IDPWLGRQKSCPVCKSSIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	0	1
AT1G76630			Tetratricopeptide repeat (TPR)...		Lus10025170 [exp]	2.8	0.8209
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	2.8	0.8037
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001860 [exp]	4.5	0.7927
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	5.2	0.8004
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10005692 [exp]	6.7	0.7674
AT2G41020			WW domain-containing protein (...		Lus10027285 [exp]	7.5	0.7656
AT2G30320			Pseudouridine synthase family ...		Lus10042233 [exp]	8.5	0.7578
AT2G47210	MYB		myb-like transcription factor ...		Lus10003470 [exp]	9.6	0.7429
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	11.8	0.7722
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	12.3	0.7698

Compare expression of checked genes

Lus10023671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.