Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33150 772 / 0 PED1, KAT2, PKT3 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) AT1G04710 684 / 0 KAT1, PKT4 3-KETO-ACYL-COA THIOLASE 1, peroxisomal 3-ketoacyl-CoA thiolase 4 (.1) AT5G48880 610 / 0 PKT2, PKT1, KAT5 PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, 3-KETO-ACYL-COENZYME A THIOLASE 5, peroxisomal 3-keto-acyl-CoA thiolase 2 (.1.2.3) AT5G48230 195 / 2e-57 EMB1276, ACAT2 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) AT5G47720 188 / 8e-55 Thiolase family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011748 [exp] 806 / 0 AT2G33150 767 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10011879 [exp] 660 / 0 AT2G33150 725 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10022812 [exp] 652 / 0 AT2G33150 702 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10039109 [exp] 192 / 1e-56 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10038749 [exp] 190 / 3e-55 AT5G47720 663 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10006362 [exp] 169 / 9e-48 AT5G47720 652 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10012317 [exp] 172 / 2e-46 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051900 [exp] 765 / 0 AT2G33150 780 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.001G051800 [exp] 723 / 0 AT2G33150 673 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.002G216400 [exp] 683 / 0 AT2G33150 660 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.006G004400 [exp] 181 / 7e-52 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Potri.014G168700 [exp] 168 / 2e-47 AT5G48230 665 / 0.0 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) Potri.013G097500 [exp] 91 / 1e-22 AT1G04710 94 / 2e-24 3-KETO-ACYL-COA THIOLASE 1, peroxisomal 3-ketoacyl-CoA thiolase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02803 [flax] [poplar] Thiolase_C Thiolase, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00108 [flax] [poplar] Thiolase_N Thiolase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023672 pacid=23148306 polypeptide=Lus10023672 locus=Lus10023672.g ID=Lus10023672.BGIv1.0 annot-version=v1.0 ATGGAGAAAGCAATCAACAGACAGCGCATCCTTCTCGATCACCTCCGCCCTTCCTCCTCCTCCTCCTCCTCCGATCACACTTATGAATACGCTCTCTCGG CTTCCGCTTGTTTGGCTGGGGACAGCGCTGCTTATCATAGGAACTCGGTCTTCGGCGACGATGTTGTGATTGTAGCGGCGCATCGCACTCCATTATGCAA ATCTAAACGTGGAAGTTTCAAAGACACCTTTGCTGACGATTTGCTTGCACCTGTTCTAAAGGCAGTGATAGAGAGAACGAAACTTGATCCTAGTGAGGTT GGGGATATTGTTGTCGGAACCGTGTTGGCACCGGGATCACAAAGAGCAAGTGAATGTAGGATGGCTGCATTCTATGCTGGATTCCCGGAGACTGTTCCCG TCAGAACTGTGAACAGGCAATGCTCATCTGGTCTTCAGGCAGTTGCTGATGTTGCTGCATCTATCAAAGCTGGATTTTACGACATTGGCATTGGAGCTGG TTTGGAATCCATGACCGTTAACCCAATGGCTTGGGATGGTGATGTCAACCCAAAAGTAAAAGCTTTTGAGCAAGCTCAAAATTGCCTTCTTCCTATGGGT GTCACTTCTGAAAATGTTGCTCAACGGTTTGGTGTTACTAGGAAGGAGCAGGACGAAGCTGCAGTTAATTCCCATAGGAAAGCTGCTGCCGCCACTGCTG CTGGTAAATTCAAGGATGAAATTATCCCAGTTGCTACAAAGATTGTGGACCCAAAGACAGGTGATGAGAAACCCATCACAGTTTCTGTTGATGATGGTAT TCGTCCCAACACATCCGTGGTGGAGTTGGGCAAACTGAGGGCCGTCTTCAAGAAAGATGGAACGACCACTGCTGGAAATTCTAGCCAAGTGAGTGATGGT GCTGGGGCTGTGTTGCTCATGAGGAGAAGTATTGCAATGCAAAAGGGGCTACCTATCCTTGGAGTGTTCAGGAGTTTTTCTGCTGTCGGGGTTGATCCTT CAATTATGGGTGTTGGTCCAGCTGTTGCAATTCCAGCTGCTGTTAAGGCTGCTGGTCTACAGCTTGAAGATATTGACCTGTTTGAGATAAACGAGGCATT TGCATCTCAGTTTGTCTACTGTGGTAAGAAGCTTGGACTTGACCCAGAGAAGATCAACGTTAATGGAGGAGCAATGGCCATTGGACATCCTTTGGGTGCA ACAGGTGCTCGATGTGTGGCTACATTATTGCACGAGATGAAGCGACGTGGAAGAGACTCTCGATTTGGAGTGGTGTCTATGTGCATAGGTACTGGGATGG GAGCAGCAGCAGTGTTCGAGAGAGGTGATTGTGGGGATGATCTCTGCAATGCCAAGAAAATAGAGAGCCAGAATCTCTTGTCCAAAGATGCCAAGTGA
AA sequence Show only first row Show all	>Lus10023672 pacid=23148306 polypeptide=Lus10023672 locus=Lus10023672.g ID=Lus10023672.BGIv1.0 annot-version=v1.0 MEKAINRQRILLDHLRPSSSSSSSDHTYEYALSASACLAGDSAAYHRNSVFGDDVVIVAAHRTPLCKSKRGSFKDTFADDLLAPVLKAVIERTKLDPSEV GDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAASIKAGFYDIGIGAGLESMTVNPMAWDGDVNPKVKAFEQAQNCLLPMG VTSENVAQRFGVTRKEQDEAAVNSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPITVSVDDGIRPNTSVVELGKLRAVFKKDGTTTAGNSSQVSDG AGAVLLMRRSIAMQKGLPILGVFRSFSAVGVDPSIMGVGPAVAIPAAVKAAGLQLEDIDLFEINEAFASQFVYCGKKLGLDPEKINVNGGAMAIGHPLGA TGARCVATLLHEMKRRGRDSRFGVVSMCIGTGMGAAAVFERGDCGDDLCNAKKIESQNLLSKDAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	0	1
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10023392 [exp]	2.0	0.9062
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10021207 [exp]	2.8	0.9187
AT1G14780			MAC/Perforin domain-containing...		Lus10041285 [exp]	3.0	0.8954
AT3G30390			Transmembrane amino acid trans...		Lus10035140 [exp]	6.1	0.9264
AT2G16790			P-loop containing nucleoside t...		Lus10041345 [exp]	7.5	0.8764
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10028797 [exp]	7.7	0.9001
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10037448 [exp]	7.7	0.8841
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028075 [exp]	7.9	0.8623
AT5G03380			Heavy metal transport/detoxifi...		Lus10014421 [exp]	8.5	0.9163
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Lus10043224 [exp]	8.9	0.8688

Compare expression of checked genes

Lus10023672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.