Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24220 675 / 0 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT1G78390 615 / 0 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G14440 604 / 0 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G30100 582 / 0 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT4G18350 562 / 0 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT3G63520 313 / 1e-99 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT4G19170 306 / 4e-96 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT4G32810 101 / 2e-22 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) AT2G44990 63 / 3e-10 MAX3, CCD7, ATCCD7 carotenoid cleavage dioxygenase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011750 [exp] 934 / 0 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 476 / 4e-163 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10035696 [exp] 328 / 1e-104 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029513 [exp] 330 / 1e-103 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 317 / 1e-100 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 318 / 6e-97 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10042482 [exp] 262 / 4e-82 AT1G78390 374 / 4e-125 nine-cis-epoxycarotenoid dioxygenase 9 (.1) Lus10008443 [exp] 191 / 5e-55 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10042481 [exp] 178 / 8e-53 AT1G78390 271 / 2e-88 nine-cis-epoxycarotenoid dioxygenase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176300 [exp] 746 / 0 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.011G112400 [exp] 619 / 0 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.001G393800 [exp] 611 / 0 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G084100 [exp] 597 / 0 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.009G151900 [exp] 337 / 6e-108 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152200 [exp] 335 / 2e-107 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.019G093400 [exp] 331 / 1e-105 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 329 / 2e-105 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G265600 [exp] 328 / 4e-105 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.005G069100 [exp] 325 / 2e-103 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10023673 pacid=23148347 polypeptide=Lus10023673 locus=Lus10023673.g ID=Lus10023673.BGIv1.0 annot-version=v1.0 ATGATTTTTATAACAAAAACGCTAATCAACACAAATTCACACAGCGGTGTATCTAATGTTGTTACTTATACCAACAACACTCCTACTCACTCCAAAATTT CAACTGTATATAACCACCTTTCCATAACAACACAACCTCCTCCTCCTCCTCCTCGCTGGACGAAGAAAACAATTCCCCCGCCGGAGCTTCCCGTCGACCA ACGCATCCATCATCTCAACGTTCTTCAGAGGCTGGCCGCATCCGCGTTGGATAAAGTGGAAGGTTCAATCATCGACCCATGGGAGAAATCCCACGTGCTG TCCAAGACCATTGATCCAGCGGTCCAAATCTCCGGCAACTTCGCCCCGGTCCATGAGTGTCCCGTTCGGCACGGTTTGCAAGTTGTGGGCCACATCCCTG ACTGCCTGCATGGTGTCTACCTCCGTAACGGCGCCAACCCCTTTCACGCCCCCACAGGTGGGCACCACTTGTTCGACGGGGACGGAATGGTCCACGCCCT CACATTGGGCCAGGAAGGATCCGCTAGCTACAGCTGCCGATACACTCGGACCAGCCGTTTCGAGCAAGAATCCGCTTGGGGGAAGCCCATGTTCCCAAAG CCCAATGGGGAGCTTCACGGACACGCCGGCTTGGCTCGGCTCGCTTTATTTATGGCTAGGTCCGGAGCTGGGTTGTTAGACAGTTCGCGTGGGGTTGGGG TGGCCAACGCTGGCCTTGTCTACTTCAATGGTAGGCTGCTGGCTATGTCCGAGGATGATCTCCCTTACCATGTTAGGATCAACGGTGATGGGGATCTGGA GACGATCGGACGGTTCGATTTCGATCATCAGCTGGACTGCCCCATGATCGCTCACCCTAAGGTGGACCCTGTAACAGGAGAGCTGCACTCGTTGAGCTAC AACGTGATGGAAAGGCCGTACTTGAAATATTTTAGTTTCCACGCGGACGGGAGGAGAAAGCGACACGTGGACATACCCCTTGAGAAACCGACCATGATTC ACGATTTTGCCATGACGGAGAATTTCATCCTCATCCCGGACCATCAGGTCGTGTTTAAGCTGTCTGAAATGGTTAGGGGTGGGTCCCCGGTTATCTACGA TAGGAAGAAGAAGTCGAGGTTCGGGGTATTGTCGAGAAACGACGACGAATCAGGAGTTAAATTCATAGAGGTACCTGACTGCTTTTGCTTTCATCTTTAC AATGCGTGGGAGGAAGGGGAAGAGATAGTGATACTAGGGTCATGCATGGACCCACCCGATTCGATATTTAACAACGAATCGGGGAGTGATGTCGCAATGC GAACAGAGCTGTCAGAAATTCGGTTGAACCTGAGAACCAAGGAGTCGAGCAGAAAGGCAATAGTGTCAGGGATGAATTTGGAAGTGGGGCAAGTGGACCG TCGGTTATTGGGGAGGAGGAACCGGTTCGTGTACTTGGCGATAGCGGAACCGTGGCCGAAATGCAGCGGGATAGCGAAGGTTGATGTTGAGAGCAAGGAA GTGAGACGGTTCGATTACGGTAAAAGACGGTTTGGCGGAGAGCCGTTTTACGTGCCCAAGAATGCAATAAATAGTAATAGTGACGGGGATGGTGGTGATA GCGGTGAGGGGTATTTGATGGGATTTGTGAGGGATGAAGAGGAAGAGAAGTCGGAGCTTGTGATAGTGGATGCTTCGACAATGGAGCAAGTAGCGGCTGT GGTTCTTCCTGCAAGAGTGCCTTATGGCTTTCATGGCACTTTTGTTTCTCAATATGATTTGACACGACAGTCACCTACCTACCTAGCTAGCTAA
AA sequence Show only first row Show all	>Lus10023673 pacid=23148347 polypeptide=Lus10023673 locus=Lus10023673.g ID=Lus10023673.BGIv1.0 annot-version=v1.0 MIFITKTLINTNSHSGVSNVVTYTNNTPTHSKISTVYNHLSITTQPPPPPPRWTKKTIPPPELPVDQRIHHLNVLQRLAASALDKVEGSIIDPWEKSHVL SKTIDPAVQISGNFAPVHECPVRHGLQVVGHIPDCLHGVYLRNGANPFHAPTGGHHLFDGDGMVHALTLGQEGSASYSCRYTRTSRFEQESAWGKPMFPK PNGELHGHAGLARLALFMARSGAGLLDSSRGVGVANAGLVYFNGRLLAMSEDDLPYHVRINGDGDLETIGRFDFDHQLDCPMIAHPKVDPVTGELHSLSY NVMERPYLKYFSFHADGRRKRHVDIPLEKPTMIHDFAMTENFILIPDHQVVFKLSEMVRGGSPVIYDRKKKSRFGVLSRNDDESGVKFIEVPDCFCFHLY NAWEEGEEIVILGSCMDPPDSIFNNESGSDVAMRTELSEIRLNLRTKESSRKAIVSGMNLEVGQVDRRLLGRRNRFVYLAIAEPWPKCSGIAKVDVESKE VRRFDYGKRRFGGEPFYVPKNAINSNSDGDGGDSGEGYLMGFVRDEEEEKSELVIVDASTMEQVAAVVLPARVPYGFHGTFVSQYDLTRQSPTYLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Lus10023673 [exp]	0	1
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10015988 [exp]	4.6	0.9230
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10010453 [exp]	7.1	0.8980
AT1G75580			SAUR-like auxin-responsive pro...		Lus10034511 [exp]	7.2	0.8675
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Lus10011750 [exp]	8.1	0.8929
					Lus10004996 [exp]	10.2	0.8899
					Lus10003285 [exp]	11.4	0.8899
					Lus10000363 [exp]	12.5	0.8899
					Lus10025781 [exp]	13.5	0.8899
					Lus10027602 [exp]	14.4	0.8899
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10006612 [exp]	15.2	0.8767

Compare expression of checked genes

Lus10023673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.