Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24060 162 / 3e-52 Plant self-incompatibility protein S1 family (.1) AT4G16195 57 / 7e-11 Plant self-incompatibility protein S1 family (.1) AT5G06020 54 / 9e-10 Plant self-incompatibility protein S1 family (.1) AT1G04645 53 / 1e-09 Plant self-incompatibility protein S1 family (.1) AT4G24975 52 / 3e-09 Plant self-incompatibility protein S1 family (.1) AT1G26798 51 / 1e-08 Plant self-incompatibility protein S1 family (.1) AT1G26799 51 / 2e-08 Plant self-incompatibility protein S1 family (.1) AT1G11765 50 / 2e-08 Plant self-incompatibility protein S1 family (.1) AT1G28305 50 / 3e-08 Plant self-incompatibility protein S1 family (.1) AT4G24973 49 / 4e-08 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011754 [exp] 217 / 2e-74 AT3G24060 152 / 1e-48 Plant self-incompatibility protein S1 family (.1) Lus10017719 [exp] 190 / 3e-63 AT3G24060 157 / 4e-50 Plant self-incompatibility protein S1 family (.1) Lus10033675 [exp] 92 / 6e-25 AT3G24060 72 / 4e-17 Plant self-incompatibility protein S1 family (.1) Lus10030565 [exp] 64 / 2e-13 AT3G16970 91 / 7e-24 Plant self-incompatibility protein S1 family (.1) Lus10038164 [exp] 60 / 4e-12 AT3G26880 68 / 2e-15 Plant self-incompatibility protein S1 family (.1) Lus10038163 [exp] 53 / 2e-09 AT3G26880 65 / 3e-14 Plant self-incompatibility protein S1 family (.1) Lus10025935 [exp] 52 / 3e-09 AT3G26880 68 / 2e-15 Plant self-incompatibility protein S1 family (.1) Lus10025937 [exp] 52 / 2e-08 AT3G26880 68 / 4e-14 Plant self-incompatibility protein S1 family (.1) Lus10022830 [exp] 50 / 3e-08 AT2G06090 67 / 6e-15 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G175200 [exp] 205 / 3e-69 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1) Potri.001G053100 [exp] 203 / 2e-68 AT3G24060 171 / 2e-55 Plant self-incompatibility protein S1 family (.1) Potri.001G053300 [exp] 80 / 1e-19 AT3G24060 82 / 2e-20 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 79 / 4e-19 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.010G008300 [exp] 75 / 7e-18 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.003G175100 [exp] 61 / 2e-12 ND / Potri.016G066900 [exp] 61 / 3e-12 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 59 / 1e-11 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.001G053200 [exp] 56 / 1e-10 AT3G24060 56 / 1e-10 Plant self-incompatibility protein S1 family (.1) Potri.002G263900 [exp] 54 / 5e-10 AT3G24060 46 / 5e-07 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10023675 pacid=23148303 polypeptide=Lus10023675 locus=Lus10023675.g ID=Lus10023675.BGIv1.0 annot-version=v1.0 ATGAGAATCACCAAGAAAATGCTTCTTCTCTTCCTCTGCCTTACAGTGGGGATCATCTTCTTCTCAGCTTACGACGACCGACAGCAGTACTTCTGGATGC AGCTAGATTACGATGTTCGTGTCATCAACGGCTTCACCAACAACTCATCCCTTCCCCTAGTCATATGGTGCTCATCCGGTGACAATGATCTTGGAGGTCG AGCCCTTCAGGAAGGCGAAGACTTCGGCTGGAGCCTCCGGACCAAGTTCTGGGGCAGCAACATTTTCTTGTGTACCATGAAGTGGGATGCCAGGAGGAGG AAGTTCGACGCTTTTAAGGTTCCTAGGGATGTTCAGCGATGCAGCCCTACGAGGAAGTGCTCGTGGTTGGTTAGAGAGGATGGCTTCTATTTCAGCAGCG ATGAAGTTAACTGGAACAAAGACTTCTCTTGGTCCTGA
AA sequence Show only first row Show all	>Lus10023675 pacid=23148303 polypeptide=Lus10023675 locus=Lus10023675.g ID=Lus10023675.BGIv1.0 annot-version=v1.0 MRITKKMLLLFLCLTVGIIFFSAYDDRQQYFWMQLDYDVRVINGFTNNSSLPLVIWCSSGDNDLGGRALQEGEDFGWSLRTKFWGSNIFLCTMKWDARRR KFDAFKVPRDVQRCSPTRKCSWLVREDGFYFSSDEVNWNKDFSWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24060			Plant self-incompatibility pro...		Lus10023675 [exp]	0	1
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10016763 [exp]	7.1	0.8476
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10039556 [exp]	12.8	0.8309
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10020412 [exp]	16.2	0.7856
AT3G19990			unknown protein		Lus10017359 [exp]	29.6	0.7905
AT5G25360			unknown protein		Lus10005466 [exp]	37.7	0.7623
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10032625 [exp]	39.0	0.7999
AT4G30310			FGGY family of carbohydrate ki...		Lus10001312 [exp]	44.9	0.7897
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	48.8	0.7794
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	50.0	0.8012
AT5G04980			DNAse I-like superfamily prote...		Lus10033398 [exp]	53.5	0.7663

Compare expression of checked genes

Lus10023675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.