Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04650 790 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011755 [exp] 1815 / 0 AT1G04650 752 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G175300 [exp] 1147 / 0 AT1G04650 900 / 0.0 unknown protein Potri.001G053000 [exp] 1132 / 0 AT1G04650 861 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023676 pacid=23148354 polypeptide=Lus10023676 locus=Lus10023676.g ID=Lus10023676.BGIv1.0 annot-version=v1.0 ATGGAGAGTGGGAGCGCGGGCGGTGGCGACTTGCAGAGCCTAATAGAAGCCATTAAATCCTCCGATGTCGCGGAGAAGAGGATTCAACTGCTTGCTCAGC TCGAAGGCTTGGACTTACGTGGGAAATCCGAGTTGGCCTCTCTGGTTGAATGCCTATCTACATTTTGGGAGGACTACACTTGCTTGGATGCGTCGCAGTG TGTGTTGAATAAAACCATTGTACATGTAGCCACCAAATTCGTAGGTTCAGATTCATCTGAATGTATGCCAGAGTTTCTTGCTCTTGCTACCAAGGCCAGC TCATGGTGTGGAAAGCATTTGAAGATGACTCTCATGTCTACAAACGAGTCTCAAGAGGAAGAACACTGCCACCTCTTTTTCCAGCTTCTTTTGGAGTTCC TGGGCCTGGCTACTGTTAACATAATATGTCTAACAAGAAATCCCCTCCTGAGCAGCAAGGAATCAGTAGTTATTGTTGAGAACTTCATCCGAGAAGTGCT AAATCTGATAAAGGATGTTATACCAGAGATTAAGAGAATGAATTCCTTGGGTCCAGAATTGCTGAAGGTTGCTCAAACAGCGGTTGGTGCTTTGATGAAT TTTTGCAAGGGGTATTTCAAAATTATGAATGAGAATCTCTGTGATGGAAGGCTTAAAGATGCTAGTGCCATAGCATCAGAAGGGGTCAGCGTTAAGAATC ATGTTGCAAATATAACAAAATTTATGGTTGAAGGACTGTGTGAGCTAGGGAGTCTAGCTGCAAGTGATGGTGGAAGTCTGGTCACCATTCTCAATATGTC ATGGAAAGGTGTCGTTACTCTGCTTCAGTTGGGCAAGGAAGTAATATTGCAGAAAGTAAGTGTGCAAGATATTATTAGAACGTTAACATCATTGGTAAGC GAGCATCTTAAATCTGCAACTCAGGCCTGGTCTTCTACCAAAGAAACCGTTTCTGTTGCTGAATCCAGAAGGACTTTTATTCCAGTGAAGTTTTACCTTA TCAATGCAGTTAAGATATCATTACTGTACCCATGCCAAGCATGTTTGGTATACAGAGAGTTAATGATCTGCATCCTAATTATCTCAACCTTTAGGATTTC ACTAAGCTACCAGGAAAATTTGAAAAATGCTAGTCAAGTCTGCTCAGAACTATTGGATAAGACATCCATGGATCTTCTGACTTCTATATTGTGTTCATCT GAAGTGAACCAAGACCTCAAGGATGAAGTTTTGAACTGGCTTTTCGCTGATGAATGCGTCTCTGTTTCACTGCAAAGGGATTCAAGTACTTGTTACAACA CAGGTTCAATGATTGAAATCTTTTCTGTCAGTTGTGAAGATGTTCCTAGGTCCGTATTGTTGTTACTTGGCCGCGTTGCATTATTCCAAGCTGTGCTTAG CCAGTCTGCTGGATTTGAAGAAGACGTGAAGATGAAACTTACTAGAAAACTTGGATGGGTCTTAGATGTTATGGTCAACGTGGATATATATTCTTATGTT CTTGCTTTGCAAATTCCTGTACTACATGATTTTGGGCAAAAGCTGGAAATTGTTTGGCAGCCCATGTTTGCAGCTCTGGTGGATTCTCTAAAGGCTTTTA TGATCGTTTTGTCATCAAGTATTGCGTGGGAGGAATTGCAGGATTTCTTGCTTGAGAATATTTTTCATCCTCATTTTCTTTGCTGGGAAATCATAATGGA AATGTTATGCTTTTTAGTTCGTTATGCTGAAGCAGAATTCGGAAAAGCTCTTACTTATGAACTCTGTGTCATGATGAAGCTGACAGCTGATCCTGCATCG ATTATCTTTCCTACTTCTCCACTGAGAAAGATGGCAAAGGCAATCTGTTTGGTTCTTACAAATGGTAAAGCTTCTACTGTAGACCACATTTACAGGTTTA TTGTTGACAATGATGAATCACAATCATCGATGATAATATATTCAGCACTGCTCTTGGAAGGTTTTCCTCTAAATATGCTGCCAGAGGACATAAGAACGAC GGCTAAGCAGAAAATTATGATAGATTATTTCGGCTTCATAGAGAAATTTAATGAAAGACAGCTGCAAGTTAGCCACTCTAATGCTTTTGGATCTCCAGTT TTTGCTATATGTGCTTCCATGCAGTCGCACCAGGTCAGCATATCCGACGTTGACATGAAGACCCTGAAGTTTCTAACTAAAATTATCCAGAACTTGAAGA ATCCTAAAGAGAAGTCAACGAAGGAACAATGCTTTAAGCTCTTGAGTGTAGCATTGGAAATCGTGGCAGAGATGAAGCACCTTTATCAATCTGATGAGAT GGAGAAAGTCGTCATGGAACTTCACAGCCTATTCATCTCAGTGGAGGCAGCCTCAGATTCTCAGTTGCACCAGTGCAAACCACATTTGGCACTCTTCATG GAAGGACTTGGACAGATGCAGCTGTCAGAAGATGATGATTGCGCAAAGAGCAATGCAGTGTGGGAATTATACAAAATGCTGCTGAGGGAACGGAATTGGG CAGTTGCTCACCTTGCAATTGCATCATTTGGACACTTTGCCGGTCGTACGTCTTGCACTGCGCTCTGGAGATTTGTTCCACCAGATGCAGCCCTTTCATA TGATGCCATGTCAGCAAGTGAAGCATCCGAGGATAGGTTTATGTCTGCAATGAAGGCAGTCCTGGACAAGGAAGACGCAGTATTAACGATTGCAGTCAGC TCCCAGCAGCATGAGTTGCTTGTGAAGGAAGGAACCATACTGAGAGAAATAGTTGCGAGAATGCGTGAGATGCACATAGAAGAGGATGCAGAATCTGATG CCTTGGGGATCGAAGTAGAAGGTCAATGCAGGAAGAGAAGAAAGCTCCCCGATGGTATCAGCAGAGGAGTAGAGTTGCTGCAGGATGGTCTAAAGGTTAT TGGCGACGGTCTTTCTCAGTGGCATGAGAATCTTGTTGATTCCACTGAACTTCAAGAGAAGATTCTAACTCAATATTCTCGTCTTGAAGATGTGATCTCA AATCTATCAGGCTTGGCTGACAGTAGTTGA
AA sequence Show only first row Show all	>Lus10023676 pacid=23148354 polypeptide=Lus10023676 locus=Lus10023676.g ID=Lus10023676.BGIv1.0 annot-version=v1.0 MESGSAGGGDLQSLIEAIKSSDVAEKRIQLLAQLEGLDLRGKSELASLVECLSTFWEDYTCLDASQCVLNKTIVHVATKFVGSDSSECMPEFLALATKAS SWCGKHLKMTLMSTNESQEEEHCHLFFQLLLEFLGLATVNIICLTRNPLLSSKESVVIVENFIREVLNLIKDVIPEIKRMNSLGPELLKVAQTAVGALMN FCKGYFKIMNENLCDGRLKDASAIASEGVSVKNHVANITKFMVEGLCELGSLAASDGGSLVTILNMSWKGVVTLLQLGKEVILQKVSVQDIIRTLTSLVS EHLKSATQAWSSTKETVSVAESRRTFIPVKFYLINAVKISLLYPCQACLVYRELMICILIISTFRISLSYQENLKNASQVCSELLDKTSMDLLTSILCSS EVNQDLKDEVLNWLFADECVSVSLQRDSSTCYNTGSMIEIFSVSCEDVPRSVLLLLGRVALFQAVLSQSAGFEEDVKMKLTRKLGWVLDVMVNVDIYSYV LALQIPVLHDFGQKLEIVWQPMFAALVDSLKAFMIVLSSSIAWEELQDFLLENIFHPHFLCWEIIMEMLCFLVRYAEAEFGKALTYELCVMMKLTADPAS IIFPTSPLRKMAKAICLVLTNGKASTVDHIYRFIVDNDESQSSMIIYSALLLEGFPLNMLPEDIRTTAKQKIMIDYFGFIEKFNERQLQVSHSNAFGSPV FAICASMQSHQVSISDVDMKTLKFLTKIIQNLKNPKEKSTKEQCFKLLSVALEIVAEMKHLYQSDEMEKVVMELHSLFISVEAASDSQLHQCKPHLALFM EGLGQMQLSEDDDCAKSNAVWELYKMLLRERNWAVAHLAIASFGHFAGRTSCTALWRFVPPDAALSYDAMSASEASEDRFMSAMKAVLDKEDAVLTIAVS SQQHELLVKEGTILREIVARMREMHIEEDAESDALGIEVEGQCRKRRKLPDGISRGVELLQDGLKVIGDGLSQWHENLVDSTELQEKILTQYSRLEDVIS NLSGLADSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04650			unknown protein		Lus10023676 [exp]	0	1
AT1G77600			ARM repeat superfamily protein...		Lus10025655 [exp]	8.5	0.9153
AT4G02110			transcription coactivators (.1...		Lus10001455 [exp]	11.9	0.9054
AT3G57060			binding (.1.2)		Lus10039013 [exp]	16.2	0.9050
AT3G10180			P-loop containing nucleoside t...		Lus10010441 [exp]	19.7	0.8948
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10007725 [exp]	23.9	0.8958
AT4G14180		ATPRD1	putative recombination initiat...		Lus10021481 [exp]	24.7	0.8002
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Lus10006990 [exp]	26.5	0.8906
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	27.9	0.8925
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10025091 [exp]	29.7	0.8884
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	34.8	0.8923

Compare expression of checked genes

Lus10023676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.