Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24240 1266 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 1148 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 824 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 791 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G34110 716 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 597 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 584 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 544 / 3e-175 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 527 / 4e-170 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 530 / 7e-169 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011756 [exp] 1784 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 877 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 868 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10032954 [exp] 815 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000509 [exp] 754 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 745 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 516 / 1e-165 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 511 / 1e-163 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000814 [exp] 503 / 9e-161 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G052500 [exp] 1415 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 1405 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 910 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G070900 [exp] 864 / 0 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G164800 [exp] 839 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G467300 [exp] 838 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.015G080800 [exp] 818 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.012G088100 [exp] 813 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G198000 [exp] 738 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 734 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023677 pacid=23148313 polypeptide=Lus10023677 locus=Lus10023677.g ID=Lus10023677.BGIv1.0 annot-version=v1.0 ATGCTCAGCTCGAGGCACCACCACCATTACCATTTCTTCTTCTTCCTTATCTTCTTCACCGTTTCTTCTTCTTCTTCCTCTGAACAGCAAAACCCAGAAT CAGTCCTTCTCCTAGCATGGCTCCAATCCTTTCAATCCCCACCTCCCACTTCTTTCTCAAACTGGAACAACTCCTTCTCCTCTCCTTGCAACTGGACATT CCTCTCCTGCAACAACAATGGCTTCCTCACCCAAATCAACATCAAGTCTGTCCCTCTTCAGGCTCCCCTGCATCCTCTCAACCTCTCCTCTTTCCGCTCC CTCACCACCCTCATCATCTCCGATTCCAACATCACCGGCACTATCCCGCCGGACATCAGCAGCGTTTCTTCTCTTAGGGTTCTCGATCTCAGCTCCAATA GTTTAACAGGCAACATTCCTCCCACTCTTGGCCAACTTACCAATCTCCAGCACTTGGTCCTTAACTCCAACCAGCTCACCGGAAACATCCCTCCACAGCT CTCCAACTGCATTTTCTTGGAAACCCTCGAGATTTTCGACAATCGGTTATCTGGGTTTATCCCTCCTCAGCTTGGCAAGCTCTCCAGCCTTGAAGTTCTC AGAGCTGGTGGCAACAGTGAACTCTCCGGTCCAATACCTGAAGAGCTTGGCGCTTGCATTAACTTGACCGTTTTGGGTCTGGCCGAAACCAGGATTTCCA GGTCGATTCCTGTTTCATTGGGTAGGCTCCAGAATCTCCAGACGCTTTCCATTTACACGACGATGCTCTCCGGCGAGATTCCTCCTGAGATAGGTAACTG TACTGAGCTTGTCGACTTGTTTCTTTACGAGAATGGTCTTTCCGGTTCGATTCCTCTCGAGATTGGGAAGCTTGGGAAACTTGAGCAGCTGTTGCTGTGG CAGAATAACTTGGTTGGTGTTATCCCTGAAGAGATAGGTAACTGTTCTGCTTTGAGAATGATTGATCTTTCATTGAACTCTCTCTCTGGAACTATACCAT CTTCGCTTGGACGGCTTTCTGAGCTGGTGGAGTTTATGATTAGTAACAACAATGTCTCTGGTTCAATACCTTCCACCCTTTCCAATGCCACAAACTTGTT GGAGTTGCAGCTTGATACTAATCAGATCTCCGGTTTGATTCCTCCGGAGCTCGGGATGTTATCTAAGCTCAACGTGTTGTTTGCATGGCAAAACCAGCTT GAAGGAAGCATTCCTTCCACTCTTGCTACTTGCGCTGACCTCCAATCTGTGGACTTGTCTCACAATTCCCTCACTGGTACCATTCCTCCTGGTCTGTTCC AGCTTCAAAACCTCACCAAACTTCTGCTGATTGCAAATGACATTTCTGGTTCCATCCCTCCCGAGGTTGGCAACTGTAGCTCTCTTGTGCGTTTGAGGCT GGCGGGTAACAGGATTGCTGGTTCCATTCCTAAGGAGATTGGTGTTCTCCAGAGCTTGAACTTTCTTGACCTGTCCCGAAACAGGTTATCCGGTTCGATC CCTAACGAGATTGGAAGCTGCTCGGAGCTGCAAATGATTGACCTCAGCAACAATGTCATACAAGGGTCCCTTCCTAACACCATCTCATCATTGACTGGAT TACAAGTCTTGGATGTTTCTGGTAATCAGTTGTCAGGTCAGATACCCGCAAGCTTGGGCCGGTTGCTGTCACTGAACAAGCTTATAATGAGCAGGAATTC CTTATCTGGGATGATACCTTCTTCACTTGGCTTGTGTTCCAGTCTGCAATTGCTTGACCTTGGTGGAAATCAGCTCAGTGGGAACTTCCCTGTGGAGCTG TGTCAGATTGAAGCACTTGAGATTGCTCTCAACCTCAGTAGTAATCAACTTAGAGGCCCTATCCCACCTCAGATGTCTGCACTCACTAAGCTTTCAATAC TAGACCTTTCTCGTAACTTGTTTGAGGGTCAATTAGATCCACTTGCAGATCTTGAAAATCTTGTGTCCCTCAACATTTCTTACAATAATTTCACTGGCTA TCTTCCTGATAATAAGCTCTTCAGGCAGATAGATCCAGCAGATTTGACAGGGAACAGAGGACTCTGTTCCACAATCCACGACTCTTGTTTCTTGACTACT GGGGTTGGCAAGGCGGGACTTCCTGGTAACGAAGCGAGGAGATCGCGGAGGCTTAAGATTGCAATAGGTTTGCTCATCGCCCTGACGGTGGCAATGGTGA TTATGGGGACAATGGCAATAGTTCGTGCTCGTAGAGCCATACGAGACGGTGATGATGAATCTGAACTAGGGGATTCATGGCCTTGGCAGTTCACCCCACA AAACACAATGGCAGCACCAGCCAATGGTGAGAAAGGAGGTGGTGGTGGTGTTCGTGATTCGTTTTCAACCGAAGTGAAAACACTCGGCTCTATCAGGCAC AAGAACATCGTGAGGTTCTTGGGATGTTGTTGGAATCGTAGCACAAGGCTTCTGATGTATGATTACATGCCAAATGGAAGCCTTGGGGCTCTTCTCCATG AGAGGACAGGACATGCACTAGAATGGGACTTGAGGTATCAAATCCTGTTGGGAGCTGCACAAGGACTATCTTATTTGCACCATGATTGTATCCCCCCTAT TGTCCACAGAGACATCAAGGCTAATAACATTCTCATTGGTCTCGAATTCGAGCCTTACATTGCTGATTTCGGCCTTGCCAAGCTGGTAGACGATGGCGAT TTTGCCAGATCATCCAACACAATTGCTGGCTCATACGGTTACATTGCTCCTGAATATGGGCACATGCTGAAAATCACAGAGAAAAGTGATGTTTACAGCT ATGGGGTGGTGGTATTAGAAGTCTTAACCGGGAAGCAACCGATTGATCCAACAATTCCTGAAGGTCTCCATCTAGTTGACTGGGTTAGAGAAAGAAGAGG AGGAATGGAAGTGCTGGACCAAAGCCTGTTAACCAGACCAAAACCAGAAGTTGAGGAAATGATGCAGGCATTGGGAGTGGCATTGTTGTGTGTAAATTCC ACCCCTGATGAAAGACCAACAATGAAAGATGTTGCGGCGATGTTGAAGGAGATCAGACATGAGAGAGAAGAGTACGCCAAGGTCGATGCTCTTCTAAAAG GATCTCCACAAGCAGCAGCACCAAGTACTACCACCAGCAACAGCAACAAAGATCAAGGGAATAGAAATTCAGGTAATGGTGAGGCTGCAACAGGGGTAAC CTCTGCAGCAAGAAGTCTGTTTCCGAAGAGTAATAACTCAAGCTTCTCAGCTTCATCTCTGCTTTACTCATCGTCATGA
AA sequence Show only first row Show all	>Lus10023677 pacid=23148313 polypeptide=Lus10023677 locus=Lus10023677.g ID=Lus10023677.BGIv1.0 annot-version=v1.0 MLSSRHHHHYHFFFFLIFFTVSSSSSSEQQNPESVLLLAWLQSFQSPPPTSFSNWNNSFSSPCNWTFLSCNNNGFLTQINIKSVPLQAPLHPLNLSSFRS LTTLIISDSNITGTIPPDISSVSSLRVLDLSSNSLTGNIPPTLGQLTNLQHLVLNSNQLTGNIPPQLSNCIFLETLEIFDNRLSGFIPPQLGKLSSLEVL RAGGNSELSGPIPEELGACINLTVLGLAETRISRSIPVSLGRLQNLQTLSIYTTMLSGEIPPEIGNCTELVDLFLYENGLSGSIPLEIGKLGKLEQLLLW QNNLVGVIPEEIGNCSALRMIDLSLNSLSGTIPSSLGRLSELVEFMISNNNVSGSIPSTLSNATNLLELQLDTNQISGLIPPELGMLSKLNVLFAWQNQL EGSIPSTLATCADLQSVDLSHNSLTGTIPPGLFQLQNLTKLLLIANDISGSIPPEVGNCSSLVRLRLAGNRIAGSIPKEIGVLQSLNFLDLSRNRLSGSI PNEIGSCSELQMIDLSNNVIQGSLPNTISSLTGLQVLDVSGNQLSGQIPASLGRLLSLNKLIMSRNSLSGMIPSSLGLCSSLQLLDLGGNQLSGNFPVEL CQIEALEIALNLSSNQLRGPIPPQMSALTKLSILDLSRNLFEGQLDPLADLENLVSLNISYNNFTGYLPDNKLFRQIDPADLTGNRGLCSTIHDSCFLTT GVGKAGLPGNEARRSRRLKIAIGLLIALTVAMVIMGTMAIVRARRAIRDGDDESELGDSWPWQFTPQNTMAAPANGEKGGGGGVRDSFSTEVKTLGSIRH KNIVRFLGCCWNRSTRLLMYDYMPNGSLGALLHERTGHALEWDLRYQILLGAAQGLSYLHHDCIPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGD FARSSNTIAGSYGYIAPEYGHMLKITEKSDVYSYGVVVLEVLTGKQPIDPTIPEGLHLVDWVRERRGGMEVLDQSLLTRPKPEVEEMMQALGVALLCVNS TPDERPTMKDVAAMLKEIRHEREEYAKVDALLKGSPQAAAPSTTTSNSNKDQGNRNSGNGEAATGVTSAARSLFPKSNNSSFSASSLLYSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	0	1
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	1.4	0.9361
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	2.0	0.9307
AT3G49950	GRAS		GRAS family transcription fact...		Lus10014852 [exp]	4.5	0.9316
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	4.7	0.9197
AT3G24240			Leucine-rich repeat receptor-l...		Lus10011756 [exp]	5.4	0.9079
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10008710 [exp]	7.2	0.9182
AT3G26590			MATE efflux family protein (.1...		Lus10036854 [exp]	8.0	0.9234
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10036922 [exp]	9.0	0.9088
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	10.5	0.9314
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10033756 [exp]	11.7	0.9120

Compare expression of checked genes

Lus10023677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.