Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13720 356 / 3e-126 Inosine triphosphate pyrophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011757 [exp] 450 / 1e-162 AT4G13720 354 / 3e-125 Inosine triphosphate pyrophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G175800 [exp] 361 / 3e-128 AT4G13720 341 / 8e-121 Inosine triphosphate pyrophosphatase family protein (.1) Potri.001G052400 [exp] 355 / 5e-126 AT4G13720 348 / 8e-124 Inosine triphosphate pyrophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0269 [flax] [poplar] Maf PF01725 [flax] [poplar] Ham1p_like Ham1 family
Representative CDS sequence Show only first row Show all	>Lus10023678 pacid=23148372 polypeptide=Lus10023678 locus=Lus10023678.g ID=Lus10023678.BGIv1.0 annot-version=v1.0 ATGGCAGCGGCAGCCAGCTTAGCAGCATCAAAGGTTGTGGTGCCCCGACCGGTGACATTTGTGACTGGAAACGCCAAGAAGCTTGAGGAAGTTCGCGCCA TTCTCGGCCAATCCATTCCATTTCAGTCCCTCAAGCTCGACCTTCCTGAGCTTCAAGGCGAACCCGAAGATATCTCCAAGGAGAAAGCTCGCCTTGCGGC TATCCAAGTGAAAGGATCCGTCTTGGTGGAGGACACTTGCCTTTGCTTCAATGCTCTCAATGGTCTTCCTGGCCCCTACATCAAGTGGTTTCTGCAGAAG ATCGGTCATGAAGGTCTGAACAACTTGTTGATGGCATATGAGGATAAGTCTGCTTACGCTTTATGTTCATTCTCTTTTGCTCTCGGACCTGATGTGGAGC CTATAACCTTCATTGGGAAAACTCCGGGGAAAATAGTAGCTGCAAGGGGACCTACTGATTTTGGATGGGATCCGATATTTCAACCTGATGGCTTTGAGCA AACTTATGCAGAGATGGCTAAGGAAGAGAAGAATAAGATATCCCACCGCTACAGAGCTCTTGCAATGGTGAAAGACCACTTTGCAGAAGCTGGTTATGTC TTCGATACTGATGCATTGACGAAGAGTGAGCATAATCTTGTCCCTCCTAGTCTAATACTCTATGTTGAAGCTGATACATTTCATTATGTCTCTCACTCAC TGGACTTGCCCTTGTATCAGGGAAAAGGGAGGAGGATGGTGTAG
AA sequence Show only first row Show all	>Lus10023678 pacid=23148372 polypeptide=Lus10023678 locus=Lus10023678.g ID=Lus10023678.BGIv1.0 annot-version=v1.0 MAAAASLAASKVVVPRPVTFVTGNAKKLEEVRAILGQSIPFQSLKLDLPELQGEPEDISKEKARLAAIQVKGSVLVEDTCLCFNALNGLPGPYIKWFLQK IGHEGLNNLLMAYEDKSAYALCSFSFALGPDVEPITFIGKTPGKIVAARGPTDFGWDPIFQPDGFEQTYAEMAKEEKNKISHRYRALAMVKDHFAEAGYV FDTDALTKSEHNLVPPSLILYVEADTFHYVSHSLDLPLYQGKGRRMV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13720			Inosine triphosphate pyrophosp...		Lus10023678 [exp]	0	1
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10008620 [exp]	2.8	0.8864
AT5G62290			nucleotide-sensitive chloride ...		Lus10027193 [exp]	13.3	0.8700
AT5G06620		SDG38, ATXR4	SET domain protein 38 (.1)		Lus10013535 [exp]	23.2	0.8051
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	24.1	0.8544
AT3G12390			Nascent polypeptide-associated...		Lus10024109 [exp]	29.1	0.8527
AT4G01040			Glycosyl hydrolase superfamily...		Lus10029447 [exp]	30.6	0.8121
AT5G66540			unknown protein		Lus10001234 [exp]	32.6	0.8345
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	37.5	0.8515
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10029583 [exp]	41.7	0.8345
AT5G19300			unknown protein		Lus10034063 [exp]	42.0	0.8407

Compare expression of checked genes

Lus10023678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.