Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13710 658 / 0 Pectin lyase-like superfamily protein (.1.2) AT1G04680 634 / 0 Pectin lyase-like superfamily protein (.1) AT3G07010 607 / 0 Pectin lyase-like superfamily protein (.1) AT3G24670 592 / 0 Pectin lyase-like superfamily protein (.1) AT5G48900 582 / 0 Pectin lyase-like superfamily protein (.1) AT4G13210 567 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G24230 563 / 0 Pectate lyase family protein (.1) AT1G67750 553 / 0 Pectate lyase family protein (.1) AT4G24780 548 / 0 Pectin lyase-like superfamily protein (.1.2) AT5G63180 546 / 0 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011758 [exp] 712 / 0 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10038157 [exp] 636 / 0 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011885 [exp] 630 / 0 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 629 / 0 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 528 / 0 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011400 [exp] 526 / 0 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10006456 [exp] 525 / 0 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10033037 [exp] 518 / 0 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 494 / 3e-174 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G052300 [exp] 702 / 0 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 689 / 0 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 652 / 0 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 641 / 0 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.015G087800 [exp] 572 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 562 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 529 / 0 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 523 / 0 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 520 / 0 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.006G122000 [exp] 468 / 8e-163 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10023679 pacid=23148397 polypeptide=Lus10023679 locus=Lus10023679.g ID=Lus10023679.BGIv1.0 annot-version=v1.0 ATGGCGGAGCCTCTCAGACTGTTTGCTCTCTGCACACTGCTGCTCGTCGTTCTTCTTGTCGGAGTTACGGCGACTACTCGGACCGGCGGCGGGTTTCCCG GTCTCACTCTTACTCGGAATGTTGGAACAGAGCCGTTGCAGAGCTCGAGTAACTCGTCCATGGCGGCTAGGCGTTATGACAGTAGCACCGGAGAAGGAGT TGGTGAATCGGTGAATAATGAGGATGCTGTGCAGGACCCTGAAGAGGTGGTTGCCATGGTCGAAACGAGCATCCACAACAGTACTGAAAGGAGAAAACTA GGCTACTTCTCTTGCGGAACTGGCAATCCTATTGATGATTGCTGGCGCTGCGACCCACATTGGCAGAAAAACCGTAAGCGGCTAGCTGACTGCGGCATTG GGTTCGGGAGGAATGCCATTGGTGGGCGTGACGGCAGGTACTACGTTGTCACAGACCCTAGGGACGATGATCCTGTGAACCCAAGACCAGGTACCCTGCG CCATGCTGTGATCCAGGACAGACCATTGTGGATCGTGTTCAAGAGGGATATGGTAATTCAATTGAAGCAGGAACTGATCATGAACAGCTTCAAGACCATT GACGGTCGTGGGGCCAATGTCCACATCGCCAACGGTGGATGCATCACTATTCAGTTTGTTACCAACGTGATAATCCATGGACTCCACATCCACGACTGCA AGCCCACCGGTAATGCTATGGTTAGGAGCTCGCCGACACACTACGGATGGAGGACAATGGCTGACGGTGATGCCATCTCCATCTTTGGGTCGAGTCATAT TTGGGTTGATCACAACTCACTCTCTCACTGTGCTGATGGCCTAGTAGATGCTGTGATGGGATCCACGGCCATCACCATCTCCAACAACCACATGACCCAC CATAATGAGGTTATGCTGTTGGGCCACAGTGACTCTTACACAAGGGACAAACAAATGCAAGTGACCATCGCATACAACCATTTTGGAGAGGGACTGATCC AGAGAATGCCAAGATGTAGACACGGCTACTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTACGCCATTGGTGGGAGTGCTGACCCCACAAT TAACAGCCAGGGTAACAGATACAATGCCCCGGTCAACCGCTTTGCCAAGGAGGTAACAAAGAGAGTGGAGACAGCAGCAACTGCGTGGAAGAACTGGAAC TGGAGGTCAGAAGGAGACCTGTTGCTTAACGGTGCTTATTTCACACCGTCAGGAGCAGGGGCCTCAGCCAGCTACGCACGTGCTTCGAGCTTGGGTGCAA AATCATCATCAATGGTAGGAACAATCACTTCCAATGCAGGTGCCCTCGGGTGTCGCCGTGGCCGCCAGTGCTAG
AA sequence Show only first row Show all	>Lus10023679 pacid=23148397 polypeptide=Lus10023679 locus=Lus10023679.g ID=Lus10023679.BGIv1.0 annot-version=v1.0 MAEPLRLFALCTLLLVVLLVGVTATTRTGGGFPGLTLTRNVGTEPLQSSSNSSMAARRYDSSTGEGVGESVNNEDAVQDPEEVVAMVETSIHNSTERRKL GYFSCGTGNPIDDCWRCDPHWQKNRKRLADCGIGFGRNAIGGRDGRYYVVTDPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTI DGRGANVHIANGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHMTH HNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYNAPVNRFAKEVTKRVETAATAWKNWN WRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALGCRRGRQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13710			Pectin lyase-like superfamily ...		Lus10023679 [exp]	0	1
AT4G13710			Pectin lyase-like superfamily ...		Lus10011758 [exp]	1.0	0.9479
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10014599 [exp]	2.0	0.9190
AT2G47500			P-loop nucleoside triphosphate...		Lus10010302 [exp]	3.5	0.9170
AT5G16730			Plant protein of unknown funct...		Lus10009550 [exp]	4.0	0.9087
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	5.7	0.8947
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	5.9	0.9034
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	10.7	0.9048
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Lus10022601 [exp]	14.3	0.8620
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10013342 [exp]	14.9	0.8912
AT5G16300			Vps51/Vps67 family (components...		Lus10037382 [exp]	15.5	0.8937

Compare expression of checked genes

Lus10023679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.