Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63930 196 / 6e-59 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 187 / 8e-56 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 161 / 1e-46 Leucine-rich receptor-like protein kinase family protein (.1) AT1G34110 119 / 5e-32 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 118 / 9e-32 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 116 / 5e-31 Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 114 / 2e-30 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT3G24240 112 / 2e-29 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G75820 110 / 1e-28 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 109 / 2e-28 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011761 [exp] 278 / 5e-89 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017782 [exp] 121 / 1e-32 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10018911 [exp] 120 / 2e-32 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 117 / 3e-31 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000509 [exp] 117 / 3e-31 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 115 / 2e-30 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 115 / 2e-30 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 115 / 2e-30 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10003503 [exp] 109 / 2e-30 AT1G72180 278 / 2e-87 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G174900 [exp] 218 / 8e-67 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G053400 [exp] 216 / 4e-66 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 208 / 3e-63 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G025500 [exp] 205 / 4e-62 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 162 / 5e-47 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 124 / 2e-33 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 120 / 2e-32 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G198000 [exp] 118 / 1e-31 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 117 / 2e-31 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 117 / 4e-31 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023680 pacid=23148294 polypeptide=Lus10023680 locus=Lus10023680.g ID=Lus10023680.BGIv1.0 annot-version=v1.0 ATGTCTGCAGTTGCTGGATCTTATGGATATATTGCACCTGAATATGCATACACGATGAAGGTGACAGAAAAATGCGACATCTACAGCTACGGAGTTGTTC TGTTGGAGTTGCTAACTGGAAGAACTCCGGTACAGCCTATAGAACAAGGAGGAGATCTTGTGACATGGGTGAAACAATATATCCGCGAGCATTCACTATC CCCCGGAATACTTGATCATAGATTAAAGCTTGAAGATCGAAGAATCATTGATCACATGATAACAGTGATGAAAATTGCTCTCGTCTGCGCAAGTATATCC CCATTTGACCGGCCATCGATGCGAGAAGTTGTACTGATGCTGATCGAGTCGAATGAGCAACAGGGGAACTTGATTGAGTTCCCAAATAATGATGTTCATC TGATAGAGGAAGAAGAGGGTGCTCCATAA
AA sequence Show only first row Show all	>Lus10023680 pacid=23148294 polypeptide=Lus10023680 locus=Lus10023680.g ID=Lus10023680.BGIv1.0 annot-version=v1.0 MSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPIEQGGDLVTWVKQYIREHSLSPGILDHRLKLEDRRIIDHMITVMKIALVCASIS PFDRPSMREVVLMLIESNEQQGNLIEFPNNDVHLIEEEEGAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63930			Leucine-rich repeat protein ki...		Lus10023680 [exp]	0	1
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10002498 [exp]	3.5	0.9005
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Lus10022868 [exp]	3.5	0.9134
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10006273 [exp]	3.9	0.9056
AT1G72180			Leucine-rich receptor-like pro...		Lus10009476 [exp]	9.6	0.9081
					Lus10031697 [exp]	13.0	0.8281
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10004831 [exp]	13.0	0.8888
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10040678 [exp]	15.0	0.8729
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10028585 [exp]	16.1	0.8706
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Lus10024958 [exp]	16.4	0.9046
AT2G23340	AP2_ERF	DEAR3	DREB and EAR motif protein 3 (...		Lus10010043 [exp]	19.9	0.8389

Compare expression of checked genes

Lus10023680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.