Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33170 1028 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G63930 961 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 730 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 434 / 9e-136 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 434 / 8e-135 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G56040 379 / 9e-117 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G08850 368 / 5e-112 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G46330 371 / 6e-112 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G26540 355 / 2e-106 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 353 / 2e-106 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011761 [exp] 710 / 0 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039030 [exp] 401 / 2e-123 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10000509 [exp] 393 / 1e-120 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10003612 [exp] 392 / 1e-119 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10036251 [exp] 383 / 1e-115 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10008712 [exp] 376 / 1e-114 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10032954 [exp] 365 / 6e-110 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10038392 [exp] 349 / 1e-103 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10031689 [exp] 345 / 2e-103 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G053400 [exp] 1187 / 0 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G174900 [exp] 1183 / 0 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.019G025500 [exp] 1015 / 0 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G051300 [exp] 981 / 0 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 754 / 0 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G075000 [exp] 431 / 1e-133 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G164800 [exp] 425 / 1e-132 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G156200 [exp] 426 / 2e-131 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.002G258200 [exp] 424 / 5e-131 AT4G08850 674 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.008G009300 [exp] 419 / 4e-130 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023681 pacid=23148353 polypeptide=Lus10023681 locus=Lus10023681.g ID=Lus10023681.BGIv1.0 annot-version=v1.0 ATGGCTCCAAGTAATGAATCAAGGAGAGTTGTTGATTCATGGTTTACAACAATTCTCCTTATTTTAGCATTGTTGGTTTCCCCTTCGGAAGGGTTGAATT CTGAAGGTCAATACCTGCTAAAGCTGAAGAATGGCCTAACTGATGAACTGAATTACTTGGAAGATTGGAATCCAGCGGACCAGACGCCCTGCTGGTGGAC GGGAGTCAACTGTACCTCTGACTATACGCCTGTGGTCTGGTCTCTTGATTTGAGTTCAATGCACCTCTCTGGAACTCTGAGCTCCAGTATTGGTGGTTTG ATCCACCTGAGTTATCTCAATGTGTCTTTCAACAAGTTGACAGGAGATATACCAAAGGCGCTTGGAAATTGTACCAAGTTGCAGCAACTAGTTTTGAACA ATAATCAGTTCAGTGGTCAAATTCCTACTGAGATTGGCAACTTATCTCTTCTTCAACTTTTGAACATATGCAACAATAAGATTTCCGGATCGCTCCCTGA AGAGTTTGGGAAGTTGGCCTCATTGGTTGAGTTTGTTGCCTATACAAACAATATCACTGGTCCACTGCCTCAATCCATTGGAGACCTCAAGAGTTTGGAG ACATTTCGAGCAGGTCAGAACGGGATTTCTGGTAGCATTCCGCCAGAGATAGGTGGATGTCAGAGCTTGAAGCTGCTTGGTCTTGCCCAAAATGACATAG GAGGTGATCTTCCCAATGAAATTGGAATGCTTGGGAGCTTAACTGATTTGATACTGTGGGATAATCAACTGTCAGGTTTCATACCCAAGGAGCTTAGCAA CTGTACAAGTCTTGAGACACTTGCCTTGTATGCTAACACTTTTGTTGGTCCTATTCCTGTGGAGCTCACCAATTTGAAGAATCTGAATAAGTTGTATATC TACAGGAATCAGTTGAATGGAACTATTCCAAGACAAATTGGGAATCTGTCTACGGCAACAGAGATCGATTTCTCCGAAAACTATTTGACTGGCGAGATCC CGGTTGAGTTCAGTCAGATAGAGGATCTGACACTACTCTACCTTTTCCAGAATCAGCTCACTGGTGTAATACCAAGTGAGCTTAGTGGTTTGAGGAACTT GACAAAGCTCGATCTCTCGATTAATTACCTCACTGGACCTATCCCATACGGGTTCCAGTACTTGACACAAATGCTTCAGTTACAGCTTTTTGAGAATTCC CTGAGTGGTCGAATCCCTCCTGCTCTTGGTGTGCACAGCAGACTTTGGGTGGTTGATTTTTCAGAAAATGATCTGACGGGAAGGATTCCTCCGTATATAT GTCGTCATTCCAACTTGATTATGTTGAATCTTGAGTCTAACAAAATCTATGGAAACCTTCCAGCAGGGTTATTAACCTGCAAATCACTGGTACAACTTCG TCTCGTTGGAAATAGGCTTACTGGCAGCTTCCCTTCTGAACTATGCAAGTTAGTAAACCTTTCTGCTATTGAGTTGGACCAGAACTGGTTTACTGGTCCA CTTCCTCCTGAAGTTGGCAATTGCCAAAAACTGCAAAGGCTTCATATTGCAAACAATTTCTTCGCCTCCATGTTGCCTAAGGAAATAGGTAATCTATCTC AACTTGTGACATTCAATGTGTCGTCAAATCTGCTCAGTGGAAGGATACCGCCAGACATGGTGAACTGCAAGATGCTTCAAAGACTTGATCTCAGCCACAA CAGTTTTACAGATAATTTGCCTGATGAGCTTGGGACCCTTTTGCAGTTAGAGATTCTCAAAGTGTCAGACAACAAATTTTCAGGAAGTATTCCTTCAGCA TTAGGACATCTTGCCCATTTGACTGAACTGCAGATGGGTGGCAACCTGTTTTCTGGCAATATCCCATCAGAGCTCGGCTCCTTGTCAAGCTTGCAGATTG CAATGAATCTCAGTTACAATAGTCTGACTGGTGAAATACCCCCGGAGCTCGGTAATCTTATTCTACTTGAATTCCTTCTGCTCAACAATAATCGTTTGAC TGGTGAGATTCCAAGAACACTTGAAAGTCTTTCAAGTTTGCTTGGCTGCAACTTCTCTTACAATAATCTCACTGGACCTGTACCTTCTGTGCCCATTTTT CAAAACATGGCTCTCAGTAGCTTCATCGGAAACAAAGGTCTTTGTGGTGGACCTCTTGGTTATTGCGGCGGGGATCCTTCTACTACGTCTGTGCCACCTT TGACGAATGTGGACAAAGTCAGGAGTAAAGTTATTACAATAGTTGCTGCTGTTGTTGGTGGAGTTTCTCTCATTCTTATTGTTATCATACTATATTTCAT GAGGCGTCCTGTTGAGACAGTTCCTTCTTTACACGACGAAGATAATGTTGTTTCGTCCTCAGAATCGGATATCTACTTCCGGCCCAAAGAGGGGTTTACC TTCCAAGATCTAGTCGAGGCCACACACAATTTCCATGACAGCTATGTCATTGGGAGGGGAGCTTGTGGAACTGTATATAAAGCAGTTATGCAATGTGGAC AAGTCATTGCGGTGAAGAAGTTGTCCTCGAATAGGGAAGGAAACAACATCGAGAACAGTTTCAGGGCCGAAATTCTGACTCTTGGGAAGATCAGACACAG GAACATTGTAAAGCTTTATGGGTTTTGCTACCATCAGGGTTCCAACCTGCTATTGTACGAGTATATGGCTAGAGGTAGTCTTGGGGAGTTGCTTCATGGA CCCTCATGTAGCTTGGATTGGCCATCATGGACCCTCATGTAG
AA sequence Show only first row Show all	>Lus10023681 pacid=23148353 polypeptide=Lus10023681 locus=Lus10023681.g ID=Lus10023681.BGIv1.0 annot-version=v1.0 MAPSNESRRVVDSWFTTILLILALLVSPSEGLNSEGQYLLKLKNGLTDELNYLEDWNPADQTPCWWTGVNCTSDYTPVVWSLDLSSMHLSGTLSSSIGGL IHLSYLNVSFNKLTGDIPKALGNCTKLQQLVLNNNQFSGQIPTEIGNLSLLQLLNICNNKISGSLPEEFGKLASLVEFVAYTNNITGPLPQSIGDLKSLE TFRAGQNGISGSIPPEIGGCQSLKLLGLAQNDIGGDLPNEIGMLGSLTDLILWDNQLSGFIPKELSNCTSLETLALYANTFVGPIPVELTNLKNLNKLYI YRNQLNGTIPRQIGNLSTATEIDFSENYLTGEIPVEFSQIEDLTLLYLFQNQLTGVIPSELSGLRNLTKLDLSINYLTGPIPYGFQYLTQMLQLQLFENS LSGRIPPALGVHSRLWVVDFSENDLTGRIPPYICRHSNLIMLNLESNKIYGNLPAGLLTCKSLVQLRLVGNRLTGSFPSELCKLVNLSAIELDQNWFTGP LPPEVGNCQKLQRLHIANNFFASMLPKEIGNLSQLVTFNVSSNLLSGRIPPDMVNCKMLQRLDLSHNSFTDNLPDELGTLLQLEILKVSDNKFSGSIPSA LGHLAHLTELQMGGNLFSGNIPSELGSLSSLQIAMNLSYNSLTGEIPPELGNLILLEFLLLNNNRLTGEIPRTLESLSSLLGCNFSYNNLTGPVPSVPIF QNMALSSFIGNKGLCGGPLGYCGGDPSTTSVPPLTNVDKVRSKVITIVAAVVGGVSLILIVIILYFMRRPVETVPSLHDEDNVVSSSESDIYFRPKEGFT FQDLVEATHNFHDSYVIGRGACGTVYKAVMQCGQVIAVKKLSSNREGNNIENSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLLYEYMARGSLGELLHG PSCSLDWPSWTLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	0	1
AT5G63930			Leucine-rich repeat protein ki...		Lus10011761 [exp]	1.0	0.9549
AT2G20010			Protein of unknown function (D...		Lus10012970 [exp]	2.4	0.8971
AT5G59990			CCT motif family protein (.1.2...		Lus10028137 [exp]	6.9	0.8644
AT5G59990			CCT motif family protein (.1.2...		Lus10042841 [exp]	7.3	0.8603
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10028585 [exp]	7.3	0.8678
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10000249 [exp]	7.6	0.7951
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10027369 [exp]	8.1	0.8571
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	8.7	0.8788
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10036225 [exp]	10.7	0.8349
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Lus10001897 [exp]	11.0	0.8706

Compare expression of checked genes

Lus10023681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.