Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24050 163 / 4e-50 GATA GATA1 GATA transcription factor 1 (.1) AT4G32890 129 / 1e-36 GATA GATA9 GATA transcription factor 9 (.1) AT3G60530 124 / 4e-35 GATA GATA4 GATA transcription factor 4 (.1) AT5G66320 124 / 4e-34 GATA GATA5 GATA transcription factor 5 (.1.2) AT2G45050 121 / 5e-34 GATA GATA2 GATA transcription factor 2 (.1) AT5G25830 122 / 6e-34 GATA GATA12 GATA transcription factor 12 (.1) AT4G34680 121 / 7e-34 GATA GATA3 GATA transcription factor 3 (.1.2) AT4G36240 118 / 6e-33 GATA GATA7 GATA transcription factor 7 (.1) AT3G51080 119 / 9e-33 GATA GATA6 GATA transcription factor 6 (.1) AT1G08010 117 / 5e-32 GATA GATA11 GATA transcription factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011762 [exp] 310 / 3e-108 AT3G24050 174 / 1e-53 GATA transcription factor 1 (.1) Lus10031096 [exp] 121 / 9e-36 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10028178 [exp] 124 / 6e-35 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10011430 [exp] 124 / 1e-34 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10038273 [exp] 122 / 7e-34 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10021466 [exp] 120 / 9e-34 AT1G08010 157 / 2e-46 GATA transcription factor 11 (.1.2) Lus10016092 [exp] 120 / 2e-33 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2) Lus10025829 [exp] 121 / 3e-33 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1) Lus10037572 [exp] 120 / 4e-33 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G053500 [exp] 220 / 1e-72 AT3G24050 171 / 4e-52 GATA transcription factor 1 (.1) Potri.003G174800 [exp] 201 / 5e-65 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1) Potri.014G058600 [exp] 126 / 4e-36 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.002G142800 [exp] 126 / 5e-36 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.018G044900 [exp] 127 / 5e-35 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1) Potri.001G188500 [exp] 125 / 6e-35 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.006G237700 [exp] 126 / 7e-35 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.009G123400 [exp] 123 / 5e-34 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2) Potri.007G016600 [exp] 122 / 3e-33 AT3G51080 179 / 2e-53 GATA transcription factor 6 (.1) Potri.004G161500 [exp] 120 / 7e-33 AT5G66320 178 / 2e-53 GATA transcription factor 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10023684 pacid=23148320 polypeptide=Lus10023684 locus=Lus10023684.g ID=Lus10023684.BGIv1.0 annot-version=v1.0 ATGGATTATCCGGAGGAAGAATTGGAATGGATTTCGAACAAGGAAGCCTTTCCGGCACTTGAAACATTCGTCGACATTATCTCAGAGCAGCCCGGTAGCC TCCCAAAGCAGAATAGCCCTGTGTCGGTGCTGGAGAACAGCATAACCAGCAGCCAAAGCAATGGGAGCTCCGGTTCGGGGTTCATAATGAGCTACTGCAG AAGCCTGCAACCACCGGTGAAGAAGGCAAGGAGTAAGCGGCACTTGAAGTGCCGCCGTGACCTCCAGGACCCTCGGCAGTGCTGGTGGAACCACGACAAC TTGAAGAGCAGCAGGAAACCGGCGGCCTCCAAGATTGGGAGGAAGTGCCAGCATTGCGGGTCGGAGAAGACTCCGCAGTGGAGGGCAGGTCCGATGGGGC CGAAAACGCTGTGCAATGCTTGCGGGGTGAGGTACAAGTCAGGGAGGCTGGTGCCGGAGTATCGGCCAGCGAATAGCCCAACATTTTCAATGGAAATGCA CTCGAATTCACACAGGAAGGTGTTGGAGATGAGGAAGAAGAAGCAGGTGCTGGGAGTTGTTGTTGTAAAGCCCTTCGAGAAGGGGTAG
AA sequence Show only first row Show all	>Lus10023684 pacid=23148320 polypeptide=Lus10023684 locus=Lus10023684.g ID=Lus10023684.BGIv1.0 annot-version=v1.0 MDYPEEELEWISNKEAFPALETFVDIISEQPGSLPKQNSPVSVLENSITSSQSNGSSGSGFIMSYCRSLQPPVKKARSKRHLKCRRDLQDPRQCWWNHDN LKSSRKPAASKIGRKCQHCGSEKTPQWRAGPMGPKTLCNACGVRYKSGRLVPEYRPANSPTFSMEMHSNSHRKVLEMRKKKQVLGVVVVKPFEKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10023684 [exp]	0	1
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10014798 [exp]	2.4	0.8059
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010172 [exp]	2.4	0.8285
AT5G45840			Leucine-rich repeat protein ki...		Lus10007516 [exp]	4.0	0.7953
AT1G12440			A20/AN1-like zinc finger famil...		Lus10006671 [exp]	4.9	0.8011
AT5G42440			Protein kinase superfamily pro...		Lus10015344 [exp]	10.5	0.7910
AT3G21570			unknown protein		Lus10034002 [exp]	11.7	0.8150
AT5G42440			Protein kinase superfamily pro...		Lus10001120 [exp]	13.3	0.7892
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042996 [exp]	14.1	0.8042
AT3G14470			NB-ARC domain-containing disea...		Lus10000417 [exp]	14.7	0.7535
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10034193 [exp]	20.7	0.7494

Compare expression of checked genes

Lus10023684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.