Plant FIBer expression Database

Lus10023686 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33180 142 / 2e-43 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011764
[exp]
193 / 3e-63 AT2G33180 157 / 2e-49 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G053700
[exp]
142 / 2e-43 AT2G33180 167 / 2e-53 unknown protein
PFAM info
Representative CDS sequence
>Lus10023686 pacid=23148348 polypeptide=Lus10023686 locus=Lus10023686.g ID=Lus10023686.BGIv1.0 annot-version=v1.0
ATGTTAAGGGGGATAACTTTTTCCACCACCACCACCACCACCAGCAGTTTCATGAGATGCTGCAACTCTTCTTCGACTCCGTTAAACTTAAATTCCTCCA
AGTTACAGAAAGAAGCGTTCCCACAATGTGGAAACAGCACAAGGAGGAGGAGCTCATTGTCGTCGTTCAGGCAGCAGAGAAGCTGCTTCGGCGCTAGGAT
AAAGCGGGCAGCAACAGGAGCCGGAGGAGGAGGAGTAGCTCATCCGCAGCTTGATTTGACAGAGGACAACATCAGGCAAGTGTTGGCAGAAGCCAGACTC
GAGGCAAGGACTGTTGCATTGTATGTTGTTGGTGTGCTGCAGCTTGGGCAGCTGTTCGATGGCTCAGTTGGGATAACAGGGGAAGTTGAACTAACTGATC
TGGATGGGCCGTATGTGAAGATTAGTCTCAAAGGTCGCTTCTGGCACAAACGCTCCACTGTAGTTGCCAGGCTTGGGAACTATCTGCAGCAGAGGATTCC
TGAAATATTAGAAGTGGAAATTGAGGATGAGAAGCAGTTGGACGACAGCCCTGCAAATTTCTAA
AA sequence
>Lus10023686 pacid=23148348 polypeptide=Lus10023686 locus=Lus10023686.g ID=Lus10023686.BGIv1.0 annot-version=v1.0
MLRGITFSTTTTTTSSFMRCCNSSSTPLNLNSSKLQKEAFPQCGNSTRRRSSLSSFRQQRSCFGARIKRAATGAGGGGVAHPQLDLTEDNIRQVLAEARL
EARTVALYVVGVLQLGQLFDGSVGITGEVELTDLDGPYVKISLKGRFWHKRSTVVARLGNYLQQRIPEILEVEIEDEKQLDDSPANF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G33180 unknown protein Lus10023686
[exp]
0 1
AT4G24750 Rhodanese/Cell cycle control p... Lus10019454
[exp]
2.8 0.9506
AT4G29590 S-adenosyl-L-methionine-depend... Lus10040550
[exp]
2.8 0.9581
AT5G14320 EMB3137 EMBRYO DEFECTIVE 3137, Ribosom... Lus10018192
[exp]
4.2 0.9576
AT1G64150 Uncharacterized protein family... Lus10024713
[exp]
4.2 0.9469
AT2G35500 SKL2 shikimate kinase-like 2, shiki... Lus10030990
[exp]
4.9 0.9457
AT5G53850 haloacid dehalogenase-like hyd... Lus10041928
[exp]
6.0 0.9531
AT5G16810 Protein kinase superfamily pro... Lus10040743
[exp]
6.3 0.9532
AT1G68590 Ribosomal protein PSRP-3/Ycf65... Lus10035036
[exp]
6.5 0.9553
AT5G44600 S-adenosyl-L-methionine-depend... Lus10038404
[exp]
9.2 0.9540
AT1G50900 LTD, GDC1 LHCP translocation defect, Gra... Lus10011151
[exp]
10.2 0.9523

Lus10023686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.