Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24040 491 / 5e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 385 / 3e-131 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 374 / 8e-128 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G15050 372 / 3e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 367 / 3e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G71070 365 / 8e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G03340 355 / 3e-119 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G15350 348 / 4e-117 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G53100 335 / 8e-112 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 312 / 2e-103 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011765 [exp] 759 / 0 AT3G24040 491 / 4e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 383 / 2e-130 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 379 / 6e-129 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10010887 [exp] 376 / 1e-127 AT1G71070 572 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10012710 [exp] 365 / 1e-123 AT1G71070 561 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10019477 [exp] 360 / 2e-121 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10043324 [exp] 360 / 2e-121 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10033714 [exp] 353 / 2e-118 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 345 / 1e-115 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G053800 [exp] 572 / 0 AT3G24040 505 / 6e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 380 / 7e-130 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 379 / 4e-129 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 370 / 2e-125 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 367 / 4e-124 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.010G114800 [exp] 365 / 5e-124 AT1G71070 581 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G399500 [exp] 357 / 1e-120 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G119600 [exp] 356 / 4e-120 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 353 / 7e-119 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G066200 [exp] 345 / 5e-116 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10023687 pacid=23148295 polypeptide=Lus10023687 locus=Lus10023687.g ID=Lus10023687.BGIv1.0 annot-version=v1.0 ATGCCGCCGTCGTCGCCGCGCCCAACCACCCCAACTACCCCCGGTGGCAAGGACAACAGCATCCGAACCACCACCTTCACCGTCATCCTCGCCACTTCTT TCTTCTCTCTCCTCTTCATCTTCTCCCTCTCATCTTCCTCCTCCTCCGCTTCGTCCCAATCCTTCAGGATACGACCCGACCCGCGTCTCTTCCCTACCCG CCAACCCACCTTCTCCAAATTCCCTTCCGATCCCGCCCCACCTTCCATCGCCTACCTCATCTCAGGATCCAAGGGCGACTCCAAACGGATCCTCCGCCTT CTCTTCGCCATTTACCACCCCAAAAACCACTACTTGCTTCATCTAGACCTCTCTGCCCCTATTTCCGAGCGGGACGCCCTTGCCCTCGCCGTCGATTCGT CCCCCGTTTTCCGAGCTGCCCAGAACGTTGATGTGATTGGGAAACCCAATTTCGCGTATCACAGAGGGTCGTCCCCAGTTTCGGCCACTTTACACGGAGC TTCTCTGTTGCTGAAGCTCTCCAATAATTGGGATTGGTTTGTTAGCCTTGGAGCTGCTGACTACCCTCTTGTCACCCAAGACGATCTGCTACACATTTTC TCCTACTTGCCCAAGGAACTCAATTTCGTGAGTCACAGTAGTTACATTGGCTGGAAAGAGTCGAGAAGACTGAAGCCAATAATTGTTGATCCAGGGCTTT ATCTGGCTGAGAAAAGTTACATGTTTCATGCCACCCAGAGGCGACCTTTGCCTACTTCTTTCAGGCTATTTACAGGTTCTTCATTCTCAGTCCTCAGTCG TAACTTCATCGAGCACTGCATCGTGGGCACCGACAACCTCCCAAGAATATTATTAATGTACTTCTCAAACACAATGTCTTCCATAACCAGCTACTTCCAT ACAGTGCTATGCAACTCCCCTCAGTTCAACAGAACAGTCATAAACCAGGACTTGCAATACAAAGTCCTGGATCTGTCCTTTAGGCAGGAACCTCGTCGTC TCAACTCCAGTGACTTCACAACCATGATCCGGAGTGGAGCTGCATTTGCCAGCCAGTTTGGAGCTAACGATCCAGTGCTAGGCATGATCGACAGTGACAT CCTGAGAAGGAGTCCTGGTGAAATCTTGCCAGGCGGGTGGTGCTTGGGAGACCCTGCAAACGGCACATGTTCAGTCTGGGGCGACGCTAATGTGCTAAGG CCGGGGAAAGGAGCAGCAAGACTTGAAAAATTTATCGTTAAAATGCTGTCTAACGGAAAGTTCAGGTCCCAGCAGTGTATAGTTGAGTGA
AA sequence Show only first row Show all	>Lus10023687 pacid=23148295 polypeptide=Lus10023687 locus=Lus10023687.g ID=Lus10023687.BGIv1.0 annot-version=v1.0 MPPSSPRPTTPTTPGGKDNSIRTTTFTVILATSFFSLLFIFSLSSSSSSASSQSFRIRPDPRLFPTRQPTFSKFPSDPAPPSIAYLISGSKGDSKRILRL LFAIYHPKNHYLLHLDLSAPISERDALALAVDSSPVFRAAQNVDVIGKPNFAYHRGSSPVSATLHGASLLLKLSNNWDWFVSLGAADYPLVTQDDLLHIF SYLPKELNFVSHSSYIGWKESRRLKPIIVDPGLYLAEKSYMFHATQRRPLPTSFRLFTGSSFSVLSRNFIEHCIVGTDNLPRILLMYFSNTMSSITSYFH TVLCNSPQFNRTVINQDLQYKVLDLSFRQEPRRLNSSDFTTMIRSGAAFASQFGANDPVLGMIDSDILRRSPGEILPGGWCLGDPANGTCSVWGDANVLR PGKGAARLEKFIVKMLSNGKFRSQQCIVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10023687 [exp]	0	1
AT2G44600			unknown protein		Lus10019505 [exp]	1.0	0.9143
AT5G35732			unknown protein		Lus10012359 [exp]	2.0	0.8930
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10011765 [exp]	7.7	0.8548
AT5G24520		ATTTG1, URM23, ...	UNARMED 23, TRANSPARENT TESTA ...		Lus10023228 [exp]	8.5	0.8628
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10029211 [exp]	10.5	0.8655
AT1G65270			unknown protein		Lus10020224 [exp]	12.2	0.8436
AT4G10810			unknown protein		Lus10023038 [exp]	12.3	0.8684
AT1G12310			Calcium-binding EF-hand family...		Lus10028915 [exp]	13.7	0.8583
AT5G53750			CBS domain-containing protein ...		Lus10042702 [exp]	18.3	0.8714
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10023348 [exp]	19.3	0.8887

Compare expression of checked genes

Lus10023687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.