Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24030 390 / 3e-138 hydroxyethylthiazole kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011766 [exp] 86 / 2e-20 ND 62 / 7e-16
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G174400 [exp] 432 / 1e-154 AT3G24030 391 / 2e-138 hydroxyethylthiazole kinase family protein (.1) Potri.001G053900 [exp] 186 / 4e-60 AT3G24030 161 / 1e-50 hydroxyethylthiazole kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF02110 [flax] [poplar] HK Hydroxyethylthiazole kinase family
Representative CDS sequence Show only first row Show all	>Lus10023688 pacid=23148357 polypeptide=Lus10023688 locus=Lus10023688.g ID=Lus10023688.BGIv1.0 annot-version=v1.0 ATGCATTCCATCCAAGACCCGACTCAGTGGGGTCCGAAATCCTGGTCGCTGCTATCCAATCTCCGGCAGCAATCCCCGCTCATCCAATGCATCACCAATT TCGTTTCCATGGACATGGTCGCCAACACTCTGCTTGCCGCCGGTGCATCTCCGGCGATGATCCACTCTCTCGAAGAGATCCCTGATTTCACTCCTCACAC CCGCGCACTCTGCGTCAACGTCGGTACACTCTCCCCCAGCTGGCTTCCCTCTATGAAGGCTGCTGCAGAGTTGATGGGTAAGCTTGGAAAGCCTTGGGTT CTTGACCCGGTAGCCGCTGGGGCTTCTGTGTTCCGATTGAATGCATGTCTGGAGCTCGTGAAGCTGAAGCCTACTGTAATTCGTGGGAACGGGTCTGAGA TTATTTCCCTTTCCAAGGCTTCTCTGGGTGCCTCCAAGGGTGCAGACAGTACCCAGGAGTCAATGGATGCACTAGAAGCAGCCAAGTCATTGGCTCAATC GAGTGGAGCTATAGTTGCTGTATCGGGAGCTGTTGATATCATAACCGATGGCAGTCGAGTGGTTGGTGCACATAACGGAGTTGCCATGATGCAGAAGATA ACAGCAACGGGGTGTGCAGTGACAGCACTCATTGCCGCTTTTGTTTCTGTTGACCCAACACATCCCTTAGAAGCAACAGCTTCAGCACTATCTGTATTCT GCATTGCGGGCGAGCTAGGAATGGCCTTGGCTAAAGGTCCAGCTTCGTTGCGGATGCAATTGATCGATTCCTTGCATGGACTTGATGAGGCTGATTTGCT GTCTCGTGTTCAAATCACAAGTCTGTAA
AA sequence Show only first row Show all	>Lus10023688 pacid=23148357 polypeptide=Lus10023688 locus=Lus10023688.g ID=Lus10023688.BGIv1.0 annot-version=v1.0 MHSIQDPTQWGPKSWSLLSNLRQQSPLIQCITNFVSMDMVANTLLAAGASPAMIHSLEEIPDFTPHTRALCVNVGTLSPSWLPSMKAAAELMGKLGKPWV LDPVAAGASVFRLNACLELVKLKPTVIRGNGSEIISLSKASLGASKGADSTQESMDALEAAKSLAQSSGAIVAVSGAVDIITDGSRVVGAHNGVAMMQKI TATGCAVTALIAAFVSVDPTHPLEATASALSVFCIAGELGMALAKGPASLRMQLIDSLHGLDEADLLSRVQITSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24030			hydroxyethylthiazole kinase fa...		Lus10023688 [exp]	0	1
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10004987 [exp]	2.8	0.7984
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10012156 [exp]	4.0	0.7964
AT3G23020			Tetratricopeptide repeat (TPR)...		Lus10021891 [exp]	8.1	0.7390
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	10.4	0.7632
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037908 [exp]	13.0	0.7441
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	13.5	0.7162
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10030125 [exp]	14.0	0.6943
AT1G49510		EMB1273	embryo defective 1273 (.1)		Lus10027929 [exp]	16.1	0.7556
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10043345 [exp]	16.4	0.7208
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	19.8	0.7331

Compare expression of checked genes

Lus10023688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.