Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13580 302 / 3e-104 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G24020 301 / 6e-104 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G07730 137 / 6e-38 Disease resistance-responsive (dirigent-like protein) family protein (.2) AT2G39430 130 / 4e-36 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G55230 130 / 5e-36 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G28670 127 / 1e-35 ESB1 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT1G65870 64 / 3e-12 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 60 / 8e-11 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G58090 59 / 3e-10 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 57 / 6e-10 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011767 [exp] 432 / 2e-155 AT3G24020 339 / 7e-119 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10029585 [exp] 125 / 3e-36 AT2G28670 166 / 6e-53 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Lus10006317 [exp] 127 / 6e-35 AT2G28670 271 / 1e-89 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Lus10030318 [exp] 104 / 6e-27 AT3G55230 276 / 2e-93 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10003301 [exp] 100 / 7e-24 AT3G55230 254 / 2e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10016231 [exp] 64 / 4e-12 AT1G65870 149 / 8e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025063 [exp] 62 / 5e-11 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 58 / 3e-10 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10021084 [exp] 57 / 7e-10 AT5G42500 164 / 2e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G174300 [exp] 337 / 6e-118 AT3G24020 315 / 2e-109 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G054000 [exp] 321 / 1e-111 AT3G24020 352 / 5e-124 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G054100 [exp] 313 / 4e-108 AT4G13580 308 / 3e-106 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.008G049200 [exp] 142 / 6e-41 AT2G28670 276 / 2e-90 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.008G049100 [exp] 123 / 9e-33 AT2G39430 251 / 6e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.010G211800 [exp] 121 / 1e-32 AT2G28670 257 / 6e-83 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.010G211900 [exp] 116 / 3e-30 AT2G39430 249 / 3e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.010G212000 [exp] 95 / 2e-23 AT1G07730 103 / 1e-25 Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.016G061000 [exp] 62 / 1e-11 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060801 [exp] 61 / 3e-11 AT1G58170 164 / 5e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10023689 pacid=23148332 polypeptide=Lus10023689 locus=Lus10023689.g ID=Lus10023689.BGIv1.0 annot-version=v1.0 ATGATATTGACCAAGGCATTGCCATCATCTATTTTCGTTTGCTTTGCATTTGCTGCAATATGCATGTCAACTTATGCAGCTGCTGTGGAACCAGCACAAG CTGCTGAAGAGCCGGTTCTAGAGTTCTACATGCACGACATTCTCGGTGGAAGTAGCCCAACAGCGAGGCCGATCACAGGCTTGCTAGGAAACATCTACAG CGGGCAGGTTCCCTTTGCTAGGCCAGTTGGGTTCGTCCCACCAAAAGGCGGAGTAGCCATCCCTAATGCCAATGGTGCCATCCCAACTGTTAATGTTAAT GGCATTCCTTTAGGAACTGGCTTGGCTGGAACCACTTATGCTGGAGGACAAGCCACTTCTGGCAACCAAAACAATCAGATCCAGACCCAGCTGGGTCCCG ACGGATTGGGACTTGGGTTCGGAACCATAACTGCCATTGATGATATTCTCACTTCCACCCCTGAGTTGGGATCACAGCAACTGGGGAAAGCTCAGGGTGT CTACGTAGCAAGCTCTGCTGATGGGAGCACCCAGATGATGTCGTTTACTGCCATGTTCGAAGGAGGGGAATTTGGTGATAGCCTTAACTTCTTTGGAGTG TACAAGATAGGGAGCCCCGTATCATATCTGTCGGTGGCCGGTGGAACTGGTAAGTTTAAGCATGCCTTTGGAAGTGCCAATGTGAGAGGGCTCATCCCTT CTGGCCAACATGTCACAGATGGTGCTGAGACATTGCTGAGGATCACTGTTCATCTTAAGTACTGA
AA sequence Show only first row Show all	>Lus10023689 pacid=23148332 polypeptide=Lus10023689 locus=Lus10023689.g ID=Lus10023689.BGIv1.0 annot-version=v1.0 MILTKALPSSIFVCFAFAAICMSTYAAAVEPAQAAEEPVLEFYMHDILGGSSPTARPITGLLGNIYSGQVPFARPVGFVPPKGGVAIPNANGAIPTVNVN GIPLGTGLAGTTYAGGQATSGNQNNQIQTQLGPDGLGLGFGTITAIDDILTSTPELGSQQLGKAQGVYVASSADGSTQMMSFTAMFEGGEFGDSLNFFGV YKIGSPVSYLSVAGGTGKFKHAFGSANVRGLIPSGQHVTDGAETLLRITVHLKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	0	1
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	1.0	0.9962
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10029409 [exp]	1.4	0.9768
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	2.2	0.9576
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	2.4	0.9595
AT1G71740			unknown protein		Lus10042773 [exp]	2.6	0.9506
AT2G36100		CASP1	Casparian strip membrane domai...		Lus10021332 [exp]	2.8	0.9582
AT3G10910			RING/U-box superfamily protein...		Lus10025146 [exp]	5.1	0.9278
AT2G21100			Disease resistance-responsive ...		Lus10025064 [exp]	5.2	0.9439
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10000318 [exp]	5.7	0.9224
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10038260 [exp]	5.7	0.9374

Compare expression of checked genes

Lus10023689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.