Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33205 437 / 4e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT3G24460 314 / 9e-104 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT4G13345 298 / 1e-97 MEE55 maternal effect embryo arrest 55, Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) AT3G06170 136 / 9e-36 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT1G16180 118 / 2e-29 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011768 [exp] 637 / 0 AT2G33205 457 / 2e-160 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10033091 [exp] 288 / 1e-93 AT3G24460 562 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10017728 [exp] 268 / 2e-85 AT3G24460 575 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10034023 [exp] 144 / 2e-38 AT3G06170 648 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10004430 [exp] 144 / 2e-38 AT3G06170 625 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10008709 [exp] 116 / 2e-28 AT1G16180 670 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10026111 [exp] 115 / 5e-28 AT1G16180 667 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G174200 [exp] 506 / 4e-179 AT2G33205 553 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.018G076000 [exp] 306 / 9e-101 AT3G24460 622 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.008G201900 [exp] 139 / 1e-36 AT3G06170 605 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G186500 [exp] 120 / 4e-30 AT1G16180 587 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.001G038100 [exp] 113 / 2e-27 AT1G16180 584 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03348 [flax] [poplar] Serinc Serine incorporator (Serinc)
Representative CDS sequence Show only first row Show all	>Lus10023690 pacid=23148299 polypeptide=Lus10023690 locus=Lus10023690.g ID=Lus10023690.BGIv1.0 annot-version=v1.0 ATGGACCTGCAGGGAGATCCTGAATCGATTCAGGCTGGTTCTGTACACAACAATGCCAGCACCATAGTTCCAGTTGAAGGTGTGGCTGATGATGATCAGT TACTGGCAAAAAGGTTTGATTACTCAATGGCTAAGAGGAAGTCACTGAGAGCTCGCTATGTGTATTGCATCATTTTCTTGATAATAAATCTTGAAGCTTG GTTCTTTAGAGACTACGGCCAACAACTCCTTAGTCGGTTCAATTATATAAAAGCTTGTGGAGTAGATGGAGAACACTGCTGTCAAACGTTGGGAGTTCTC CGAGTGAGTCTAGGATGCTTTGTATCCTTTGAAGCCAGGTCGAAGTTGTTGGCATTCGGAATGGTGGTGGGTGAAGGTTCTCATTTTGATTGTGTCGATG GGAGCTCCTTTCTTCCTTCCTTCAAATCACATTCAACTCTATGGTATATTTATTCAGCTGAGAAAACATTCATTGTTCCTCGAGTCCAGTTTATTGATAC TGCAATCTGTTTCATTGCAGGCGAACTTGCTCGTGCTGGTGCAGGGGTATTTCTAGTTCTGCAACTTGTGTCTGTGATTGAGTTCATCAGCTGGTGGAAC AACTATTGGATGCCTGATGAAGGCAAAAACCAAAGTTGCTCCTTTGGACTATTCATGTCAACAGTATTTTACATAGCTTCATTCAGTGGGATTCTGGCAA TGTACATATTTTATGGACGTAAAATAGAATGTGTTCTCAATATATTCTTCATCACATGGACTGCAGTTTTGCTTATTGTAATGATGGCCATCTCCCTGCA CTCCAAGGTGAATAGAGGTGTTCTATCCTCAGCGATCATGGCTTCATATCTCATCTTTCTTTGTTGGTCTGCTATAAGAAGTGAACCTGACAGTGCCAAA TGCAACAACCAAGCTCAAACTCATGGAAAAAGTGACTGGACCACCATAGTTAGCTTCTTGATAGCCATTGGTGCAATAGTCATGGCAACCTTCTCAACAG GAATGGATTCCAAATCATTCCAGTTCCGGAAGGAGAAGATGGAAGAAGAAGATGATATTCCATATGACTATGGTTTCTTCCATCTGGCGTTTGCATTGGG AGCTATGTATTTCGCAATGCTCTTCATCAGTTGGAACCTCAAGAGCTCAGCTACCAAGTGGAGCATTGACGTAGGATGGGCAAGTACATGGGTGAAAGTC CTGAACGAGTGGTTTGCAGCCACTATATACAGTAAGCCAATATCTGATCGGTTATTTTGTTTAACATGTAAACTGATGCTGAAGTGA
AA sequence Show only first row Show all	>Lus10023690 pacid=23148299 polypeptide=Lus10023690 locus=Lus10023690.g ID=Lus10023690.BGIv1.0 annot-version=v1.0 MDLQGDPESIQAGSVHNNASTIVPVEGVADDDQLLAKRFDYSMAKRKSLRARYVYCIIFLIINLEAWFFRDYGQQLLSRFNYIKACGVDGEHCCQTLGVL RVSLGCFVSFEARSKLLAFGMVVGEGSHFDCVDGSSFLPSFKSHSTLWYIYSAEKTFIVPRVQFIDTAICFIAGELARAGAGVFLVLQLVSVIEFISWWN NYWMPDEGKNQSCSFGLFMSTVFYIASFSGILAMYIFYGRKIECVLNIFFITWTAVLLIVMMAISLHSKVNRGVLSSAIMASYLIFLCWSAIRSEPDSAK CNNQAQTHGKSDWTTIVSFLIAIGAIVMATFSTGMDSKSFQFRKEKMEEEDDIPYDYGFFHLAFALGAMYFAMLFISWNLKSSATKWSIDVGWASTWVKV LNEWFAATIYSKPISDRLFCLTCKLMLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33205			Serinc-domain containing serin...		Lus10023690 [exp]	0	1
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	3.3	0.7860
AT5G56890			Protein kinase superfamily pro...		Lus10011933 [exp]	8.9	0.7546
AT5G23870			Pectinacetylesterase family pr...		Lus10039238 [exp]	9.0	0.7492
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10025880 [exp]	15.4	0.7391
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10038595 [exp]	16.0	0.6959
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	23.2	0.7422
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	24.2	0.6971
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10000067 [exp]	26.5	0.6914
					Lus10028745 [exp]	27.1	0.6640
AT5G53880			unknown protein		Lus10000796 [exp]	33.6	0.7483

Compare expression of checked genes

Lus10023690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.