Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23990 160 / 3e-43 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 157 / 4e-42 HSP60-2 heat shock protein 60-2 (.1.2) AT4G33280 143 / 1e-38 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G13860 131 / 6e-33 HSP60-3A heat shock protein 60-3A (.1) AT3G13470 95 / 2e-20 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT5G56500 93 / 6e-20 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT1G55490 92 / 2e-19 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT2G28000 86 / 2e-17 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT1G26230 82 / 1e-16 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT5G18820 72 / 2e-13 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016286 [exp] 403 / 8e-140 AT4G33280 166 / 7e-49 AP2/B3-like transcriptional factor family protein (.1) Lus10032872 [exp] 340 / 3e-115 AT4G33280 93 / 2e-28 AP2/B3-like transcriptional factor family protein (.1) Lus10032871 [exp] 168 / 2e-47 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10011770 [exp] 168 / 1e-45 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011898 [exp] 160 / 3e-43 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011902 [exp] 159 / 7e-43 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10022832 [exp] 157 / 4e-42 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10016285 [exp] 135 / 7e-35 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10003791 [exp] 135 / 4e-34 AT3G13860 867 / 0.0 heat shock protein 60-3A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036900 [exp] 180 / 2e-52 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 159 / 2e-44 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.003G173900 [exp] 161 / 2e-43 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.002G252900 [exp] 159 / 6e-43 AT3G23990 995 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.001G054400 [exp] 158 / 2e-42 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G039475 [exp] 129 / 3e-32 AT3G13860 810 / 0.0 heat shock protein 60-3A (.1) Potri.002G129800 [exp] 116 / 3e-28 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.003G222400 [exp] 93 / 6e-20 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.001G002500 [exp] 92 / 1e-19 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.004G213400 [exp] 86 / 1e-17 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain CL0405 [flax] [poplar] PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10023691 pacid=23148264 polypeptide=Lus10023691 locus=Lus10023691.g ID=Lus10023691.BGIv1.0 annot-version=v1.0 ATGACGATGAAAGAAAAGGAAGAAGAAGAAGGAGAATCTAAAGCATGCAGCAGCTGGGAAGAAGAGATATATTGGACACATTTCCAGTTCACCCATTTCT TCCGCTTACTGCATCCCGGCTTTCACCTTACCCTTGAAATGCCCAAGAAATTTTCCAACAGCTTGAAAAGCAAATTACCAAAGACACTGACTCTGACAGG TCCAAGCGGAGCGAATTGGAGCGTGGGATTGACAAACACAGCTGAGACGACCTTCTTCAGCAGCGGATGGAAAGAATTCGCCACCGACAATTGTCTACAG GTAGACGATCTCCTGGTGTTCAAGTACAACGGCGATTCCCACTTCGACGTCCTCATCCTCGAGTCACCAACCTCCTGCGAGAAGGCCACTGCTTATTTCG TCAAGAAGAATAATAAGAAGAAGAAGAGCGTAGGAGGCAAACAACCGTCCGTAATAACCGGGGAGAGGGAAATAATCAACGAAAATTCCGGCGGAGGGGT TTCCCCTGCCTCGACAGGAATTCGGCCGGACGTCGATTCGCCAGGGTCGTCGTCGACTGATTGGCAGCATGTATCTTCCGGTGAATGCAACAAAAGGGAC AAGGTTAAATTAGATAAGGTGGGGAAATCGAGGAGGAGGAGGGTGAGTGAACTGAATAGGACGCCAGTAACAGAGGAATCGAAAAGAAAGGCTTTGAGAC TGGCCAGCTATGCAGGAAATCAAGACAGCTTCATCTCCGTTATGAAAACTAGCAGCGTTTCTACTGCTTATTATCTGTCAGTGCCGAGCTGGTGGATGAA GAAACATGTGAACAAGTACTGGGAGACGCAAGAGGTCATACTGAAGGTGGAAGAGAATGAATGGCCGGTAAAGTTCAGACCTCGAAGGAAAAAGAATCGG AATTGGGGAGGGTTTGGTGGTGGATGGAGGATCTTCGCACAGGACAACCATCTGCAGCTTTTCGATGTTTGCTTATTCCAACCTTGCAGCTGCACACCAA CTTCTAATACTAGTCTTGTTCTGAACATCCGATCTGTAGTCAAACTGAGTACTTCCGGTTCTGAAAAGGAGAAGTTGAAAGAGAGGCTAGCAAACTTGTC TGGCGGTGTGGCTGTACTGAAGATTGGAGGTGCAAGTGAAGCTGATGTCGGTGAGAAGAAACACAGAGTTACAGATGCTCCCAATGCAACCAAGGCAGCT TTGGAAGAGGGTATTGTTCCAGGTGGTGGTGTTGCTCTTCTTTATGATGCAAAAGAGTTGGATAAACTGCAGACTGCCAACTTCGACCAGAAGATTGGTG TTCAGATTATTCAGAATGCTAAAGGTCAACTACTTCCAGATATCCGTGTTATCCCTTTTTCTTCTTCACTGCTTCTCCCAAAATGA
AA sequence Show only first row Show all	>Lus10023691 pacid=23148264 polypeptide=Lus10023691 locus=Lus10023691.g ID=Lus10023691.BGIv1.0 annot-version=v1.0 MTMKEKEEEEGESKACSSWEEEIYWTHFQFTHFFRLLHPGFHLTLEMPKKFSNSLKSKLPKTLTLTGPSGANWSVGLTNTAETTFFSSGWKEFATDNCLQ VDDLLVFKYNGDSHFDVLILESPTSCEKATAYFVKKNNKKKKSVGGKQPSVITGEREIINENSGGGVSPASTGIRPDVDSPGSSSTDWQHVSSGECNKRD KVKLDKVGKSRRRRVSELNRTPVTEESKRKALRLASYAGNQDSFISVMKTSSVSTAYYLSVPSWWMKKHVNKYWETQEVILKVEENEWPVKFRPRRKKNR NWGGFGGGWRIFAQDNHLQLFDVCLFQPCSCTPTSNTSLVLNIRSVVKLSTSGSEKEKLKERLANLSGGVAVLKIGGASEADVGEKKHRVTDAPNATKAA LEEGIVPGGGVALLYDAKELDKLQTANFDQKIGVQIIQNAKGQLLPDIRVIPFSSSLLLPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10023691 [exp]	0	1
AT2G30530			unknown protein		Lus10034444 [exp]	6.8	0.7224
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10020086 [exp]	11.0	0.7445
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10006738 [exp]	14.7	0.7042
					Lus10036026 [exp]	16.7	0.6745
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10015885 [exp]	21.0	0.6941
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10024447 [exp]	22.2	0.7157
AT4G11790			Pleckstrin homology (PH) domai...		Lus10029606 [exp]	25.7	0.6707
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027351 [exp]	30.5	0.6723
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10032500 [exp]	31.9	0.6506
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10037719 [exp]	54.4	0.6472

Compare expression of checked genes

Lus10023691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.