Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62370 498 / 5e-178 heme binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011771 [exp] 664 / 0 AT3G62370 508 / 0.0 heme binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G118600 [exp] 530 / 0 AT3G62370 502 / 2e-179 heme binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF09459 [flax] [poplar] EB_dh Ethylbenzene dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10023692 pacid=23148352 polypeptide=Lus10023692 locus=Lus10023692.g ID=Lus10023692.BGIv1.0 annot-version=v1.0 ATGGCGCATCCAGCTCTCCCGATACTGCTGCTGTTGCTCACCACCTTCTCCCACCTTAACCGGTTAGCCAACTCGCACCAGGAGTCCGGAACCTGGACTT GCGACTCCAGCTCCGACATCCGACTCCCCGCCGGATTCAACCCGGGACTCGTCACCGTCGATGGTCACCCCGACGATTGGAAGGTTGTTGAGGGCTTCGA CTTCTCCCTCCGTCCTGCTCTTGACCCCGACGCCGATAAGGAATATAAAGCTGGCAAAATGACTGTTAAGGCGTTGCATGATGGCAGTGACGTGTTCTTC TTTTTGGAAGTTGATGGGGATTATGCCTATTCTAATGGGGTCAACACCAAATGCCCTTCTGTTTCTCTCATGTTTCAAATTGGTGATGATGCCACCTATC ACAACATGGGCGGTTGTAAGGAGGGAAAAGGTACTTGTACCAGTAAGAGTTGCAAAGGCCATGAAGTTGACATCATGCACTTCTCACTTGGAAATGCTAT CCCTGGACGTCTCTATGGTGGAAATCCTATTGACAATGCAAATGGGAACGGAGGTGACAGATTTGGTCATCTAGTTGATCTTTATGCCTGGAATCCGCAC TGTAGATTTCTCGACGGTATAGGTCCCTCAGGAAACGACTCCAGTGCACAGAATAACTGGAAAGGATCGTGGTGGCATAGTAGTTTAGATGTTCACTCTG GTTTCATCCAGGAAGACAGTCCGTATGGATCAGGTGGTCAAAAGGGCAAGTACTATTTCGAATTCTCTAGGCCTTTAAGAACCATGGACAGACTCCAACA GGATGCACAGTTCACGATCAGCGGATCAAGCAAGATGGGAGTTGCATTCTGGTATCCAGTAGACGGGAATCCATGGCACGGATCAGGACATTACTCCATC AACTGTGATTGGATCCCCTTGGACATCTTACCAGGCAGTTCTAAGCTAGCGATGTCGGCATCCAGAGGAGGAGGAGGTGGTGGCTCAGGAGATGTGGCGA GTGCGTTCGCCCTTTTGTTTTCAGTAATCTCTATATGCCTCTCAGTTTTCGTGGCTTACAATGTTGCTAAACCCAGGACGAGTAGCATTCCCTTCATACC CATGGAAAATCTGTAG
AA sequence Show only first row Show all	>Lus10023692 pacid=23148352 polypeptide=Lus10023692 locus=Lus10023692.g ID=Lus10023692.BGIv1.0 annot-version=v1.0 MAHPALPILLLLLTTFSHLNRLANSHQESGTWTCDSSSDIRLPAGFNPGLVTVDGHPDDWKVVEGFDFSLRPALDPDADKEYKAGKMTVKALHDGSDVFF FLEVDGDYAYSNGVNTKCPSVSLMFQIGDDATYHNMGGCKEGKGTCTSKSCKGHEVDIMHFSLGNAIPGRLYGGNPIDNANGNGGDRFGHLVDLYAWNPH CRFLDGIGPSGNDSSAQNNWKGSWWHSSLDVHSGFIQEDSPYGSGGQKGKYYFEFSRPLRTMDRLQQDAQFTISGSSKMGVAFWYPVDGNPWHGSGHYSI NCDWIPLDILPGSSKLAMSASRGGGGGGSGDVASAFALLFSVISICLSVFVAYNVAKPRTSSIPFIPMENL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62370			heme binding (.1)		Lus10023692 [exp]	0	1
AT2G28940			Protein kinase superfamily pro...		Lus10016536 [exp]	4.4	0.7531
AT5G04020			calmodulin binding (.1)		Lus10031023 [exp]	9.8	0.6377
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	11.4	0.7310
AT3G59080			Eukaryotic aspartyl protease f...		Lus10020759 [exp]	20.4	0.7182
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10003312 [exp]	21.7	0.7169
AT3G50910			unknown protein		Lus10041772 [exp]	24.2	0.6976
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	24.6	0.7256
AT3G05010			Protein of unknown function, t...		Lus10040523 [exp]	24.9	0.6393
AT5G44710			unknown protein		Lus10001221 [exp]	25.3	0.6425
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10010804 [exp]	37.1	0.6495

Compare expression of checked genes

Lus10023692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.