Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23980 411 / 5e-133 KOS1, BLI KOLD SENSITIV 1, BLISTER (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035243 [exp] 1330 / 0 AT3G23980 428 / 6e-139 KOLD SENSITIV 1, BLISTER (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174800 [exp] 565 / 0 AT3G23980 407 / 8e-132 KOLD SENSITIV 1, BLISTER (.1) Potri.010G062000 [exp] 558 / 0 AT3G23980 389 / 2e-124 KOLD SENSITIV 1, BLISTER (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023694 pacid=23148356 polypeptide=Lus10023694 locus=Lus10023694.g ID=Lus10023694.BGIv1.0 annot-version=v1.0 ATGGCGTCAGCTCAGGTGTTGCGTAAACAGGAGCATCTCCAAGCTGGTAAACGGCGGCTAGAAGAGTTCCGCAAGAAGAAAGCAGCAGAGCGAGCCAAGA AAGCTGGAGCTACTACTGGACAATCTCAACCTTCTGATGCAATCACAGAAGAGAGAACACCTTTGGAGACAGAGCAGGTACGGGTTACAGATTCTGATGG AGTTGGTACCTCAGGTGCAGCTGCTGGAACTTTTCAAGTATCAAGTTACAGAAACGACAAGGGAGATGATATTACTAGTGAAGTTGAACACAGTGCTGCA AAAGCTGCTAAGCCATCTACAGTCAAGGATTTTAGTACAATATTATCAGATATAGGTAAGAGGAACCTTGAAAATGATGATTTTAAGAGATCAGATGTTC CAGGCGTAGGAAGAACACATGTTACCAAGTACAGTCAGATGAATGGGATGCACGAGTCTAGCACATATGGTTATGACCATTCTGTACTCTCAGATGGGAT TCTATCCGATCATTCTAACAATCCACAGGCCATCCAAGGTTCTGATGGAATTTTTACTCGGTACAGTCATTATGGGGCAGATCTTCGCCAACGAGAAGTA AACAAAATGTCATCAAGGGATTCAATGTTTACGAATCCTGCATCTCAGATATCTTCTCTCCATCGAGATTCTGTCCTCTCTAAATTAGAAGCTAAGCCCG TTGACAACAGTGAGCCTAATGCCAACTTCAGCATAAGAGGTTCAAGTCATGAAGCTTTAAAAGACACGCATAAAACATTGCAGATAGGTGATTCTACAAC AGACTTTGAGCAAAAATATTTGTCTAGCCCGTTCCCTGAGAAGCATGCTGATTTCCCTCAAGCTTCTGAATCCACCTTGTTCAATTCAGATGCCAATAAC TCCTCAAATCACGCATCTCTATATCCGGGTCAATATGAAACTAATTCCAGAAAATCCCGTCCATCTTTCCTTGATTCTATCAATGTGGCAAGGCCTACTA TGGGATCTCCATTATCACAAACAAAACCATATGAATCTTTAATGTCTGTTACCTCAACTTCAAATAGCACAGATGCTGTAGGGTCATCCAATGTTAGTAA GCCATCCGTCGAGACTACAACTGGGGGGTTGTTTTCACAGTTCAAATCTTCCAGTGCAACAGATGTACATGAACTTGATGCACCAAGATGGAAGTCTTCG GTATCGTCCTCTGATGGAATTGATGCACCAAGATCAAATTTCAATGACCTCTATATAGAAGGAAAGCATGATTTTTATTCATCTCAAAAGAATGAAGATT TTTCAGCTTTGGAACAGCACATAGAAGATTTGACTCGAGAGAAGTTCTCACTGCAACAAGCACTAGAAGCTTCACGCGCATTAGCTGAGTCTTTGGCTGC TGAAAATACTTCATTGACAGATACTTATAACCAACAGAGAAGCAATGTCAACCATCTGAAGACTGAAATGGAGAAGTTACAAGGAGAAATCAGAGCTCAC ATGGTGGAACTTGAATCCGTCAGAGTTGAGTATGCAAATGCACAGCTTGAGTGCAATGCAGCTGATGAGCGATCTAAACTATTAGCTTCGGAGGTTATTG GTTTGGAAGAGAAGGCACTCAGACTAAGGTCTAATGAGCTTAAGCTGGAGAGGGAACTAGACAACTGTCATGCTGAAATTGCTTCTTGCAAAAAGAAAAT ATCCAACCTAGAAAGAGAACGCCTGGATTTACATTCAACTATTGATGCCCTTCAAGAAGAGAAAAAGCTCATGCAATCTAAATTGCGGAAAGCTTCAACT GGTGGAAAATCTGTTGATGCCGGAAAAAGTACTGTTAAAAGGGATATGTCGACATCTACAGAAGATTTAGAAGTTTACCCAGATACGTTCAGCCAGGAAA CTTATGCAGCATCTCTTCCAAGAAACAACGCCCCTAGTTCTTCTGTTTCACATGAAATTGGACAGCCTGTTGATGAGAACTCTTCTGCATACATTCCACC AGACCAGATGAGGATGATAAAGAATATAAATGAGTTGATGTCTGAGTTAGCATTTGAGAAAGAAGAGTTGATGAAAGCTTTGGTATCTGAGTCATCTCAA TGTTCCAAATTGAAGGACCTGAACAAGGAGTTGTCCCTTAAACTTGAGGCTCAGACTCAAAGACTAGAACTCTTGGCTGCTCAGAGCATGGCCACCGAGA ACATCGCGACGAGATTACCAGAATCCCGCACCATGCAGGAGAATCCTGCATACGCTGATGAAGGAGACGAGGTTGTAGCAAGAGTGTTAGGATGGATAAT GAAACTGTTCCCTGGAGGGCCATCAAAAAGAAGAACCAGCAAGCTGCTCTGA
AA sequence Show only first row Show all	>Lus10023694 pacid=23148356 polypeptide=Lus10023694 locus=Lus10023694.g ID=Lus10023694.BGIv1.0 annot-version=v1.0 MASAQVLRKQEHLQAGKRRLEEFRKKKAAERAKKAGATTGQSQPSDAITEERTPLETEQVRVTDSDGVGTSGAAAGTFQVSSYRNDKGDDITSEVEHSAA KAAKPSTVKDFSTILSDIGKRNLENDDFKRSDVPGVGRTHVTKYSQMNGMHESSTYGYDHSVLSDGILSDHSNNPQAIQGSDGIFTRYSHYGADLRQREV NKMSSRDSMFTNPASQISSLHRDSVLSKLEAKPVDNSEPNANFSIRGSSHEALKDTHKTLQIGDSTTDFEQKYLSSPFPEKHADFPQASESTLFNSDANN SSNHASLYPGQYETNSRKSRPSFLDSINVARPTMGSPLSQTKPYESLMSVTSTSNSTDAVGSSNVSKPSVETTTGGLFSQFKSSSATDVHELDAPRWKSS VSSSDGIDAPRSNFNDLYIEGKHDFYSSQKNEDFSALEQHIEDLTREKFSLQQALEASRALAESLAAENTSLTDTYNQQRSNVNHLKTEMEKLQGEIRAH MVELESVRVEYANAQLECNAADERSKLLASEVIGLEEKALRLRSNELKLERELDNCHAEIASCKKKISNLERERLDLHSTIDALQEEKKLMQSKLRKAST GGKSVDAGKSTVKRDMSTSTEDLEVYPDTFSQETYAASLPRNNAPSSSVSHEIGQPVDENSSAYIPPDQMRMIKNINELMSELAFEKEELMKALVSESSQ CSKLKDLNKELSLKLEAQTQRLELLAAQSMATENIATRLPESRTMQENPAYADEGDEVVARVLGWIMKLFPGGPSKRRTSKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	0	1
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	2.4	0.8593
AT1G72390			unknown protein		Lus10013169 [exp]	3.9	0.8654
AT3G62900			CW-type Zinc Finger (.1)		Lus10040919 [exp]	5.7	0.8640
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10012303 [exp]	6.0	0.8547
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000272 [exp]	9.9	0.8315
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	11.0	0.8219
AT3G48195			Phox (PX) domain-containing pr...		Lus10042108 [exp]	11.2	0.8255
AT1G20760			Calcium-binding EF hand family...		Lus10016028 [exp]	11.8	0.8421
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	12.6	0.8280
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10036582 [exp]	15.0	0.7824

Compare expression of checked genes

Lus10023694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.