Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04610 689 / 0 YUC3 YUCCA 3 (.1) AT2G33230 657 / 0 YUC7 YUCCA 7 (.1) AT5G43890 601 / 0 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT4G28720 600 / 0 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT1G04180 583 / 0 YUC9 YUCCA 9 (.1) AT5G25620 504 / 4e-178 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT5G11320 485 / 1e-170 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 478 / 8e-168 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT4G13260 472 / 2e-165 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT1G21430 344 / 1e-115 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035244 [exp] 838 / 0 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10043142 [exp] 654 / 0 AT1G04610 599 / 0.0 YUCCA 3 (.1) Lus10022851 [exp] 614 / 0 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011274 [exp] 586 / 0 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10013125 [exp] 494 / 4e-174 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10008092 [exp] 493 / 8e-174 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10023637 [exp] 481 / 2e-169 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10011093 [exp] 472 / 2e-165 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10007671 [exp] 470 / 4e-164 AT4G13260 518 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174600 [exp] 720 / 0 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.010G062400 [exp] 692 / 0 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.002G254200 [exp] 644 / 0 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.006G243400 [exp] 513 / 0 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 508 / 3e-179 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 496 / 3e-175 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 484 / 3e-170 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 480 / 1e-168 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.002G207400 [exp] 352 / 5e-119 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1) Potri.005G186100 [exp] 343 / 3e-115 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10023695 pacid=23148322 polypeptide=Lus10023695 locus=Lus10023695.g ID=Lus10023695.BGIv1.0 annot-version=v1.0 ATGTACTCTGCCACTTGTCTTAACAACAACAACAACGACGACTTACCCACCACAATGTTCCAACCCATCGCCAGACAAGATGCCGCCTTCTTCTCAATCT CATCTACCCGCCGCTGCATTTGGGTTAATGGGCCCGTCATCGTCGGCGCCGGCCCGTCGGGCCTTGCCGTCGGAGCCGGCCTCAAAAGGGAAGGAGTCCC TTTCGTCATCCTCGAACGAGCAAACTGCATTGCCTCCCTCTGGCAAAACAGGACCTACGACCGCCTCAAACTCCACCTCCCCAAGCAGTTCTGCCAGCTC CCTAACTTCCCCTTCCCTGAAGATTTCCCAGAATACCCTTCCAAGTTCCAGTTCATATCCTACCTCGAATCCTACGCCCGCCATTTCGGCATTTCCCCTA ACTTCAACGAGACCGTCCAGTCCGCCAAATACGACGACACGTTTGGCCTCTGGCGGGTCAAGACCGTTTCCCACAACGGAAGTGGGGCCGAGGAGATCGA GTATATCTGTAGGTGGCTGGTTGTCGCCACCGGTGAGAATGCGGAGAAGGTTGTCCCGGAGTTTGAAGGCTTGGAAAAGTTCTCCGGCGGTGTCTCCCAC GCTTGTGATTATAGATCCGGCGAGAACTACCGTGGCCAGCGGGTGCTAGTCGTGGGTTGTGGGAATTCCGGAATGGAAGTCTCCCTTGATCTCTGCAACC ACAATGCCAGCCCTTACATGGTGGTTCGGAGCTCGGTTCATGTATTGCCGAGGGAGATTATGGGGAAATCTACGTTTGAGTTGGCGGTGAAGTTGATGAA ATGGATGCCGCTATGGATGGTTGACAAAGTATTGTTAGGTGTAGCGAGGGTGATGCTGGGAAATCTGGAGAAACATGGACTGAAAAGGCCAAGCCTTGGC CCATTAGAACACAAGAACACTCAAGGGAAGACTCCGGTTTTGGACATTGGGGCTCTGGCGAAAATCAGATCCGGTCAGGTCAAGGTTGTACCCGGAATCA AGAAATTCGGAAGTGGGAAAGTTGAGCTTGTGAATGGACAAGTTCTGGAGATAGATTCTGTGATTCTGGCAACTGGGTATTGCAGCAATGTTCCTTCATG GCTAAAGGAGAATGATTTATTTTCAGAGGATGGAGTGCCAAAGAACCCATTCCCAAATGGTTGGAAAGGGAAAGCAGGGCTATATGCAGTAGGTTTCACA AGGAGAGGGCTGTCGGGTGCATCTCTTGATGCCATTAGTGTGGCATTGGACATTTCCAAAAGCTGGAAAGAAGAGACCAAACAGAAGAAGCAAAACATGG CTACCAGGCACAGGAGATGCATTTCCCACTTCTGA
AA sequence Show only first row Show all	>Lus10023695 pacid=23148322 polypeptide=Lus10023695 locus=Lus10023695.g ID=Lus10023695.BGIv1.0 annot-version=v1.0 MYSATCLNNNNNDDLPTTMFQPIARQDAAFFSISSTRRCIWVNGPVIVGAGPSGLAVGAGLKREGVPFVILERANCIASLWQNRTYDRLKLHLPKQFCQL PNFPFPEDFPEYPSKFQFISYLESYARHFGISPNFNETVQSAKYDDTFGLWRVKTVSHNGSGAEEIEYICRWLVVATGENAEKVVPEFEGLEKFSGGVSH ACDYRSGENYRGQRVLVVGCGNSGMEVSLDLCNHNASPYMVVRSSVHVLPREIMGKSTFELAVKLMKWMPLWMVDKVLLGVARVMLGNLEKHGLKRPSLG PLEHKNTQGKTPVLDIGALAKIRSGQVKVVPGIKKFGSGKVELVNGQVLEIDSVILATGYCSNVPSWLKENDLFSEDGVPKNPFPNGWKGKAGLYAVGFT RRGLSGASLDAISVALDISKSWKEETKQKKQNMATRHRRCISHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10023695 [exp]	0	1
					Lus10034649 [exp]	3.2	0.9199
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028242 [exp]	7.3	0.9344
					Lus10024615 [exp]	15.0	0.9300
					Lus10005394 [exp]	16.1	0.9299
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037322 [exp]	16.6	0.9207
AT2G24400			SAUR-like auxin-responsive pro...		Lus10035716 [exp]	26.2	0.9168
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040732 [exp]	27.5	0.8572
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	30.9	0.9174
AT3G01840			Protein kinase superfamily pro...		Lus10041574 [exp]	32.7	0.9159
AT5G09270			unknown protein		Lus10020609 [exp]	34.6	0.8423

Compare expression of checked genes

Lus10023695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.