Plant FIBer expression Database

Lus10023697 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G23930 66 / 6e-13 unknown protein
AT4G13540 63 / 8e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004393
[exp]
303 / 5e-105 AT4G13540 109 / 2e-29 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G174400
[exp]
174 / 1e-53 AT4G13540 78 / 3e-17 unknown protein
Potri.010G062600
[exp]
159 / 2e-48 AT4G13540 74 / 4e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10023697 pacid=23148338 polypeptide=Lus10023697 locus=Lus10023697.g ID=Lus10023697.BGIv1.0 annot-version=v1.0
ATGATTTGTTTAACAGGGAAGAAGAGAGGGGGCTCAAAGGGGAAGAAGAGTAGCAGTAGTGTTAAAGGGATGGAAGAGAGAGTGAGGATATTGGAAGAGG
AGATTGAAGCAATAATGTATAAGAGGGAGAAAGAGAGCAGAGCTTATGAGAGAGATGTGATGGTTTGTGCATTCAAGGAAGCTGAGTGGAGGCAAGAGAA
GAAGAAGCTCAAGGAGGAAGTGAAGAGGCTAAGGAAACTAGTGGATGACAAGGAAGAGAGGATCAGAGTGATTCTACAGCAGCAAGGGAAAAGCCACGAG
GAAGAAGGAGACAACAATTGGCTACTCTCTGGGACTGCCACTACCTTCCTACTGCAGCAAATGAGAGAAGAGAGGGCTCTTAGAGATGAAGCTGTTGATA
AATGGAAGAAGCTCTACCTTGCTATCAAAACTGAGCTTGATCATCTCATTCAGAATACTCATCCAGGAGATGGATTGTACTGTAGAGCATCAGAGGAAGA
AGAAATTATAGATGAGCTGAAGATGGAAGCAAAGATGAAAGAAGAAATAATAGAGGATATGAAAGCAAGGCTTATTGTTGCAGAGCGGGAAGAGTTCAAC
AGGGCCAGGGAGGTAGACATTCTGAGGCAGAGTTTGAGAATCATCAGCAGCAAGAAGCAGCCTGGATTTATTCTTAGTAAACCCAAGTTCTCATTAGTTA
AACGCGTTGTCAAGGTTGTTAATTAG
AA sequence
>Lus10023697 pacid=23148338 polypeptide=Lus10023697 locus=Lus10023697.g ID=Lus10023697.BGIv1.0 annot-version=v1.0
MICLTGKKRGGSKGKKSSSSVKGMEERVRILEEEIEAIMYKREKESRAYERDVMVCAFKEAEWRQEKKKLKEEVKRLRKLVDDKEERIRVILQQQGKSHE
EEGDNNWLLSGTATTFLLQQMREERALRDEAVDKWKKLYLAIKTELDHLIQNTHPGDGLYCRASEEEEIIDELKMEAKMKEEIIEDMKARLIVAEREEFN
RAREVDILRQSLRIISSKKQPGFILSKPKFSLVKRVVKVVN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G13540 unknown protein Lus10023697
[exp]
0 1
AT2G37920 EMB1513 embryo defective 1513, copper ... Lus10024339
[exp]
7.1 0.8561
AT1G60870 MEE9 maternal effect embryo arrest ... Lus10022977
[exp]
8.1 0.7649
AT5G63650 SNRK2-5, SNRK2.... SNF1-RELATED PROTEIN KINASE 2H... Lus10004291
[exp]
11.2 0.6786
AT3G61880 CYP78A9 cytochrome p450 78a9 (.1.2) Lus10017334
[exp]
13.9 0.7423
AT4G14500 Polyketide cyclase/dehydrase a... Lus10021883
[exp]
14.0 0.7950
AT3G05170 Phosphoglycerate mutase family... Lus10024659
[exp]
14.5 0.8112
AT4G18690 unknown protein Lus10015276
[exp]
17.9 0.7450
AT4G40060 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) Lus10023159
[exp]
20.4 0.7540
AT4G10300 RmlC-like cupins superfamily p... Lus10035659
[exp]
22.2 0.7995
AT3G47430 PEX11B peroxin 11B (.1) Lus10027213
[exp]
23.1 0.7802

Lus10023697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.