Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23920 782 / 0 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G17090 578 / 0 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT4G15210 427 / 1e-144 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G00490 426 / 7e-144 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G32290 405 / 2e-135 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT5G55700 388 / 4e-129 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G45880 353 / 1e-113 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 300 / 4e-93 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G18670 266 / 6e-82 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004398 [exp] 972 / 0 AT3G23920 649 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10004396 [exp] 845 / 0 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10001087 [exp] 567 / 0 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10023698 [exp] 555 / 0 AT3G23920 552 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10011035 [exp] 551 / 0 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10040134 [exp] 530 / 0 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10003005 [exp] 504 / 1e-174 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10039701 [exp] 441 / 4e-148 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 427 / 1e-144 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G062900 [exp] 837 / 0 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 816 / 0 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G148900 [exp] 586 / 0 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 580 / 0 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G143500 [exp] 461 / 1e-156 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G087600 [exp] 445 / 7e-151 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.017G040800 [exp] 420 / 6e-141 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.014G083800 [exp] 412 / 2e-138 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.014G083700 [exp] 391 / 2e-128 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.002G159300 [exp] 381 / 5e-124 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10023700 pacid=23148317 polypeptide=Lus10023700 locus=Lus10023700.g ID=Lus10023700.BGIv1.0 annot-version=v1.0 ATGGCTATAAAGGCTGCTCATCAACTAGGTGCTCTTCAAGGATCTCGGCTCCTAGTTGAAACGATTCCCTCAGCCTGTCCATTGCTGGCCAATCGCATGA GCCAGAGAATGGACTTGGCTGAGCAAAGGTCGCCACCTGCGATTCTAGGTTGCAACGGGGGAGAAGGCAAGCGGGCCCATACATTAGTGACGCGTAGCGC ATTGGCAACCGAGGCAATACCGGAGAGTGTAGATGGAGAGTCAATGATGCATAGGGGGGGAGGCGGAAGTAATCATGCGAGTAATGGGGTTCCAGTGTTC GTGATGATGCCATTGGACAGCGTGACGATGAACAACACAATGAACAGGAAGAAGGCGATGAGTGTGAGCTTGCAGGCGTTGAAGAGCGCTGGTGTGGAAG GGATTATGGTCGACGTTTGGTGGGGATTGGTGGAGAGAGACGCTCCAGGAGTTTACAATTGGGGAGGCTACTCTGATTTGTTTGAGATGGCCAATCACTT AGGGCTCAAGGTCCAGGCTGTCATGTCATTTCACCAGTGTGGTGGCAACGTCGGCGACTCCTGCAATATTTCTTTACCCAACTGGGTCATGGAAGAGATG AACAAAGACCAAGACCTTGCATACACAGATCAATGGGGAAGGAGGAACTATGAGTATTTGTCACTGGGCTCTGATACTCTTCCAGTTCTCCAAGGCCGAT CGCCGATTCAATGTTATGCCGGGTTTATGAGTGCATTCAGAGACCAATTTAAGCATCTTCTTGGACACACCATTGTGGAAATACAACTGGGGATGGGTCC AGCTGGTGAGCTTAGGTACCCTTCATATCCAGAGCAGGACGGGACATGGAAATTTCCAGGCATTGGGGCCTTCCAATGTTATGACAAGTACATGCTCAAC AACTTAAGAGCTGCAGCTGAAGCAGCTGGTAAACCAGAATGGGGGAGCTCAGGACCGACAGATGCTGGACAATACAACAATTGGCCGGAAGACACCCAAT TCTTTCGAAAGGATAACGGTGGGTGGACTAGTCCTTATGGTGAATTCTTCCTCAATTGGTACTCCAAAATGTTATTGGATCACGGGGAGAGAATTATGTC ATCAGCAACATCCATCTTCAACAATGATGACACAAAAATCTCTGTGAAAGTAGCAGGTATCCATTGGCACTATGGCAGTCAATCTCACGCCCCAGAACTC ACTGCAGGATACTACAACACCAAAAACCATAATGGCTATCTCCCTATTGCTAGAATGTTGGCTCGCCACGGTGCCATCTTTAATTTCACTTGCATTGAGA TGCGAGACCATGAACAACCCCATGACGCATTGTGTGCTCCAGAGAAATTGGTCAAGCAAGTGGCTTTGGCAACACGTGATACACAAATTGGTTTGGCGGG GGAGAATGCCCTGCCACGTTATGATGAGTATGCTCATGAGCAGATCCTACATGCATCATCATTGAAAATTGGGGAAAATGATGAGAAAAAAATGTGTGCA TTCACATATCTCAGGATGAATCCAACTCTGTTTGAAGCAGATAATTGGAGGCCATTTGTGGGGTTGGTGAAGAAGATGAAGGAAGGTAAAGGTGCTAATC GGTGTGCAGAGCAATTAGAGAGGGAAGCTGAACACTTTGTGCATATTAGCGAGCCGCTACTGGTACGAGAGGTGGATGCGGTTGCTGCTGCTGTGCGTTA G
AA sequence Show only first row Show all	>Lus10023700 pacid=23148317 polypeptide=Lus10023700 locus=Lus10023700.g ID=Lus10023700.BGIv1.0 annot-version=v1.0 MAIKAAHQLGALQGSRLLVETIPSACPLLANRMSQRMDLAEQRSPPAILGCNGGEGKRAHTLVTRSALATEAIPESVDGESMMHRGGGGSNHASNGVPVF VMMPLDSVTMNNTMNRKKAMSVSLQALKSAGVEGIMVDVWWGLVERDAPGVYNWGGYSDLFEMANHLGLKVQAVMSFHQCGGNVGDSCNISLPNWVMEEM NKDQDLAYTDQWGRRNYEYLSLGSDTLPVLQGRSPIQCYAGFMSAFRDQFKHLLGHTIVEIQLGMGPAGELRYPSYPEQDGTWKFPGIGAFQCYDKYMLN NLRAAAEAAGKPEWGSSGPTDAGQYNNWPEDTQFFRKDNGGWTSPYGEFFLNWYSKMLLDHGERIMSSATSIFNNDDTKISVKVAGIHWHYGSQSHAPEL TAGYYNTKNHNGYLPIARMLARHGAIFNFTCIEMRDHEQPHDALCAPEKLVKQVALATRDTQIGLAGENALPRYDEYAHEQILHASSLKIGENDEKKMCA FTYLRMNPTLFEADNWRPFVGLVKKMKEGKGANRCAEQLEREAEHFVHISEPLLVREVDAVAAAVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023700 [exp]	0	1
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10031352 [exp]	4.6	0.7903
AT3G63390			unknown protein		Lus10018745 [exp]	17.1	0.6382
AT3G58480			calmodulin-binding family prot...		Lus10029323 [exp]	21.0	0.6742
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	37.5	0.6685
AT5G35390			Leucine-rich repeat protein ki...		Lus10027597 [exp]	41.6	0.6528
					Lus10043115 [exp]	44.3	0.6283
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10020004 [exp]	60.5	0.6409
AT3G16970			Plant self-incompatibility pro...		Lus10030565 [exp]	112.2	0.6141
AT1G30320			Remorin family protein (.1)		Lus10038522 [exp]	132.5	0.6108
					Lus10034724 [exp]	189.1	0.6065

Compare expression of checked genes

Lus10023700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.