Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60710 513 / 0 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 511 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 508 / 0 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 503 / 2e-180 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G10810 491 / 9e-176 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 473 / 7e-169 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 104 / 3e-25 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04420 105 / 4e-25 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G06690 104 / 4e-25 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 96 / 4e-22 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041272 [exp] 535 / 0 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 534 / 0 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 528 / 0 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041303 [exp] 382 / 2e-133 AT1G60690 419 / 1e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 381 / 3e-132 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 360 / 6e-124 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 357 / 1e-122 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037408 [exp] 302 / 4e-102 AT1G60730 311 / 6e-106 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) Lus10010566 [exp] 180 / 2e-56 AT1G10810 198 / 3e-64 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147700 [exp] 548 / 0 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 542 / 0 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 538 / 0 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 385 / 9e-134 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 379 / 2e-131 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 366 / 3e-126 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 366 / 3e-126 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G006900 [exp] 113 / 3e-28 AT5G53580 556 / 0.0 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207000 [exp] 109 / 6e-27 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 108 / 1e-26 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10023701 pacid=23148388 polypeptide=Lus10023701 locus=Lus10023701.g ID=Lus10023701.BGIv1.0 annot-version=v1.0 ATGGCGCAAGTTGGAGTGATGAAGAGGATACAGCTGGGTTCGCAAGGTCTACAAGTGTCTGCTCAAGGTCTGGGATGTATGGGTATGTCTGCGTTCTACG GACCTCCAAAACCAGACCCAGACATGATCCATCTCATCCACCACGCCGTCAACTCCGGCGTCACTCTCCTCGATACGTCTGATGTATATGGCCCTCATAC CAACGAGATCCTACTTGGAAAGGCTTTGAAAGGAGAGATTCGGGATAGAGTCGAACTGGCTACAAAATTCGGAGGCATTTTGAACGAGGACGGCACTGGA GAGATCCGAGGGGATCCTGCTTATGTAAGGTCTGCTTGTGAGGCCAGCTTGAAGAGGCTCGGTGTCGACTCCATTGATCTCTATTACATCCATCGCGTTG ATGTCCGAGTTCCAATTGAAGCCACGATGATGGAGCTGAAGAAACTGGTTGAAGAGGGTAAAATCAAGTACATAGGTATCTCAGAGGCATCTGCTTCCAC CATCAGAAGAGCTCACGCTGTTCATCCTTTAACCGCTGTCCAACTGGAGTGGTCGTTGTGGTCGAGAGATGTCGAACAAGAGATCATCCCCACTTGCAGA GAACTCGGGATTGGGATTGTTGCATATAGTCCTCTAGGACGAGGATTCTTTTCGTCGGGAACCAAACTGGCTGATACCTTTTCTGCGGGTGACATCAGAC AGTATCTACCAAGGTTCCAGCAGGGGAATATAGAACACAATGCAGCGGTATTCGAGAGGGTGAATGAGATGGCGAGTAGAAAAGGGTGCACCCCGTCGCA ACTGGCGCTTGCTTGGGTGCATCATCAGGGAGACGATGTGTGCCCGATTCCAGGGACCACCAAAATTGACAATTTCAATCAGAACGTTGGAGCTTTGTCT GTGAAGCTGAGTCCAGAAGACAAGGCTGAACTGGAGTCCATTGCTGCTGGAGATGCAGTCAAGGGTGATAGATATGCACAAGGAACCCCAACTTTCAGTA ACTCTGACACTCCACCTCTTTCTTCATGGAACCCTCCTCCTCCTGCTGTCTGA
AA sequence Show only first row Show all	>Lus10023701 pacid=23148388 polypeptide=Lus10023701 locus=Lus10023701.g ID=Lus10023701.BGIv1.0 annot-version=v1.0 MAQVGVMKRIQLGSQGLQVSAQGLGCMGMSAFYGPPKPDPDMIHLIHHAVNSGVTLLDTSDVYGPHTNEILLGKALKGEIRDRVELATKFGGILNEDGTG EIRGDPAYVRSACEASLKRLGVDSIDLYYIHRVDVRVPIEATMMELKKLVEEGKIKYIGISEASASTIRRAHAVHPLTAVQLEWSLWSRDVEQEIIPTCR ELGIGIVAYSPLGRGFFSSGTKLADTFSAGDIRQYLPRFQQGNIEHNAAVFERVNEMASRKGCTPSQLALAWVHHQGDDVCPIPGTTKIDNFNQNVGALS VKLSPEDKAELESIAAGDAVKGDRYAQGTPTFSNSDTPPLSSWNPPPPAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	0	1
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	1.0	0.9931
AT1G13340			Regulator of Vps4 activity in ...		Lus10033552 [exp]	2.4	0.9863
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	3.5	0.9861
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10042118 [exp]	3.9	0.9854
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10032885 [exp]	4.7	0.9836
AT1G16120		WAKL1	wall associated kinase-like 1 ...		Lus10008105 [exp]	4.9	0.9854
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10029035 [exp]	5.1	0.9869
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	6.3	0.9838
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10007972 [exp]	6.5	0.9849
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	7.5	0.9828

Compare expression of checked genes

Lus10023701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.