Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33250 56 / 1e-08 unknown protein AT3G04310 49 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004401 [exp] 330 / 2e-112 AT3G04310 81 / 3e-17 unknown protein Lus10003583 [exp] 66 / 6e-12 AT3G04310 140 / 1e-39 unknown protein Lus10032791 [exp] 65 / 2e-11 AT3G04310 133 / 4e-37 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063300 [exp] 101 / 2e-24 AT3G04310 88 / 3e-20 unknown protein Potri.019G023400 [exp] 65 / 1e-11 AT3G04310 108 / 9e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023703 pacid=23148351 polypeptide=Lus10023703 locus=Lus10023703.g ID=Lus10023703.BGIv1.0 annot-version=v1.0 ATGGAGAAGATAACAGGAACGTGGCGAATGGAGGAGCAGCAAATCAGTCCCTGCTGCTGGTACTCTGCCAATGGAAGCCACTATCCTTCCCGGCGGCGCT GTTGGTCGTCGCTTCCTGCTGACAAAGTCATCCTCCATTACACCTCTTGGAGAACCTCTACGGCACCTCTACGGCTTCCGAAGAACCTTTCCGTTCCCGA TTCTCTCCGTAGCAACAGAGAATTACACATCGTCGTGGCCAGGTGCCAACGTCGGGATGCTAGTGCTGACAAGGGGGAGGCAAGAGCAAGGTCAAAGACG ACGAAGCGGACGTGGTGGTCGGATGAGCCGCCTGAAATGGACAGTAAAGAAGACGAAGATGAAGAAGAAGAAGAAGAAGATGTTGGGGTTTTGGAGGAAG TGATAGAGAGTATTTGGATTCTCAAGATATTCGAACCATACGGCTGGGTGCTTCCGGTGATAATGACATCATGGTTGGCAGCGACTGGCCCAAAAGCCTT CCTTATGGCGTCAGCACTTCCTTTGGGTCAATCGGCGGTGACTTTTGTGATCGGTAGATTGTTGGGGAAGAAGACGAAGAAGAAGAAGAAGAGGAAGAAG AAACAACCGAAGCCGAAACGCAGGGTGGTGAACAGGAAGATGCCGTCTGCATCTCCCTGGAAAGGACGAAGCAGGAGCATAAACGAAATTATTGAAGAAG TGGAAGAAGAAGGAAGAAGAAGAAAGGCAGAGGAAAGTGCAAGTGGAAAGGTGCGGTATGAGTCTTGGGTCGACAGCAATGGCGCTTTTCGGGATAAGGT GGATGGGAAGCCTTCACCGCCGTCTAATAAATCCTTTGGTGGATGGGAAGAGCTTGATGGATTCAGATTCACAGAGCAGAACAGTATACCTGCGTCTGCT AGGAAGGAAAGCCAACAGCAGCCCAGGAGGAACAGAGTAACTACTGTCAATGGGAAGCCAAGCGATTTGAGAATGAATGACAGCAGTGAAACGCCACTGA TTCTGCGATTGTTAATTGCTGTTTTCCCATTTTTGGCTTCCTGGACCAAAATGTTTTAG
AA sequence Show only first row Show all	>Lus10023703 pacid=23148351 polypeptide=Lus10023703 locus=Lus10023703.g ID=Lus10023703.BGIv1.0 annot-version=v1.0 MEKITGTWRMEEQQISPCCWYSANGSHYPSRRRCWSSLPADKVILHYTSWRTSTAPLRLPKNLSVPDSLRSNRELHIVVARCQRRDASADKGEARARSKT TKRTWWSDEPPEMDSKEDEDEEEEEEDVGVLEEVIESIWILKIFEPYGWVLPVIMTSWLAATGPKAFLMASALPLGQSAVTFVIGRLLGKKTKKKKKRKK KQPKPKRRVVNRKMPSASPWKGRSRSINEIIEEVEEEGRRRKAEESASGKVRYESWVDSNGAFRDKVDGKPSPPSNKSFGGWEELDGFRFTEQNSIPASA RKESQQQPRRNRVTTVNGKPSDLRMNDSSETPLILRLLIAVFPFLASWTKMF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33250			unknown protein		Lus10023703 [exp]	0	1
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Lus10035760 [exp]	2.4	0.8281
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10041952 [exp]	3.5	0.8286
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10029654 [exp]	5.0	0.8256
AT1G78620			Protein of unknown function DU...		Lus10013691 [exp]	8.0	0.7741
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10025970 [exp]	10.2	0.7519
AT1G67660			Restriction endonuclease, type...		Lus10006437 [exp]	11.2	0.8034
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10029404 [exp]	14.5	0.7486
AT4G28660		PSB28	photosystem II reaction center...		Lus10024959 [exp]	17.0	0.8280
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10029398 [exp]	18.6	0.7640
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10031517 [exp]	18.7	0.8138

Compare expression of checked genes

Lus10023703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.