Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17740 597 / 0 Peptidase S41 family protein (.1.2) AT3G57680 271 / 4e-84 Peptidase S41 family protein (.1) AT5G46390 192 / 7e-55 Peptidase S41 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004402 [exp] 935 / 0 AT4G17740 610 / 0.0 Peptidase S41 family protein (.1.2) Lus10040494 [exp] 261 / 2e-80 AT3G57680 692 / 0.0 Peptidase S41 family protein (.1) Lus10004601 [exp] 213 / 2e-62 AT5G46390 619 / 0.0 Peptidase S41 family protein (.1.2) Lus10004545 [exp] 158 / 2e-42 AT5G46390 488 / 2e-170 Peptidase S41 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G173900 [exp] 636 / 0 AT4G17740 699 / 0.0 Peptidase S41 family protein (.1.2) Potri.006G055400 [exp] 275 / 2e-85 AT3G57680 668 / 0.0 Peptidase S41 family protein (.1) Potri.011G078700 [exp] 211 / 5e-62 AT5G46390 575 / 0.0 Peptidase S41 family protein (.1.2) Potri.010G063400 [exp] 148 / 2e-42 AT4G17740 174 / 3e-53 Peptidase S41 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0466 [flax] [poplar] PDZ-like PF00595 [flax] [poplar] PDZ PDZ domain CL0127 [flax] [poplar] ClpP_crotonase PF03572 [flax] [poplar] Peptidase_S41 Peptidase family S41
Representative CDS sequence Show only first row Show all	>Lus10023704 pacid=23148284 polypeptide=Lus10023704 locus=Lus10023704.g ID=Lus10023704.BGIv1.0 annot-version=v1.0 ATGTTTGACCTTGCCAACGTCTATGATCAGATCGAGTGGAACTTTGCGGAAGACAAGCTCCGTCGAGGGCATGTCCCAGAGAACCTCATCTCGGTGCCGC CATGGAAATCCCTGACTCTACTGGTCGTGGATGCTCGTCTACGCCCGCCCTTGCCTGAATTACGGATGGTTTCCTGGCGCAATTCGTCGATTCTCTCTGC TTGGACTCCTAACGGGAGCGTTTGGAGCCGATTGGCTCTCTACTCCTACTGCAATGAATTTAAATCGAGGAAACATATCGCCGGGGGTTCTAGAGCGGCG AGTTGCTCGGAGGAGTTAGGGAAACGTGCCTCGAAGTTCTTCTTCCAGTTGGCAGTTGCGGCAATGATGGTTACTTCTGTATCTTTTGGCGTTAGTTCTG CTCCGTCGAGTGAGTATTTGACCAACTCTGAGGCGACATTGTTGATAGGCTGTGAGTCCGCGACGGTGTTTGGTTATTTATTGACATTTTTTTCGTGTAC TGCAGATGCGCTTACCGAAGAGAATCTACTTTTCTTGGAGGCGTGGAGACTGATTGATCGTTCTTATGTCGACAAAACTTTCAATGGACAGAGTTGGTTT CGTTACAGAGAAGATGCACTCCGCAATGAGCCTATGAACACTCGCGAGGAGACGTATGATGCTATAAATAAGATGGCTGCTTCACTGGATGATCCTTTCA CTAGGTTTCTAGAACCTGAGAAGTTGAGGAGCTTGAGGTCTGGAACAGAAGGTTCTCTTACTGGTGTAGGGCTATCAATAGGCTATCCAGGTCGATCTGA GGAGTCACCTGCAGGACTGGTTGTCATTTCAACATCTCCAGGAGGTCCTGCACATAGGGCTGGCATTTTGTCTGGGGATGTAATCATGGAAATAGATGAT AAAAGCACAGAAAACATGGGTATATATGATGCAGCAGACCGTCTACAGGGTCCTGAAGGAAGTTTAGTTCAAGTGACTATTCGCAGTGGTGCTGAAGTAA AGCATCTTGCTTTGACACGAGAGAAGGTGTCTCTGAATCCCGTCAAGACTAGACTTTGTGAAATTCCTAGATCTGGGAAAGATCCGGCCAAGATAGGATA CATCAAACTGAGCTCATTCAGCCAAAATTCTGCAGGCGCTGTGAAGAAAGCTGTGAATAGTTTTAAGAGTGATGGCGTGAATACTTTTGTTTTAGACCTT CGAAATAATAGTGGCGGACTGTTTCCAGAAGGAATTGAAATTGCCAAGATTTGGTTAGACAAAGGCGTGATTGTCTATGTTTGCGACAGCCGTGGTGTTC GAGACATATATGACACTGATGGAACTGGCGCACTCGTAACATCGGACCCATTAACTGTTCTGGTAAACAAAGGGACTGCAAGTGCAAGTGAAATACTGGC AGGTGCATTGAAGGACAACAAACGAGCTGTGTTGTATGGAGAGCCCACGTTTGGAAAAGGCAAAATTCAGTCTGTTTTTCAGCTATCTGATGGATCGGGT TTGGTTGTTACAATTGCTCGTTACCAGACACCTGCTCACATTGACATTGATAAGGTTGGGGTAATTCCTGATCATCCACTGCCCAACTCATTTCCGGCTG ATGGCGATGATGGTCTCTGCATCTGCCTCCAAGACCCTGCATCTTGCAACAACCGTAACGGCCAGCTACCCGCGATGTAA
AA sequence Show only first row Show all	>Lus10023704 pacid=23148284 polypeptide=Lus10023704 locus=Lus10023704.g ID=Lus10023704.BGIv1.0 annot-version=v1.0 MFDLANVYDQIEWNFAEDKLRRGHVPENLISVPPWKSLTLLVVDARLRPPLPELRMVSWRNSSILSAWTPNGSVWSRLALYSYCNEFKSRKHIAGGSRAA SCSEELGKRASKFFFQLAVAAMMVTSVSFGVSSAPSSEYLTNSEATLLIGCESATVFGYLLTFFSCTADALTEENLLFLEAWRLIDRSYVDKTFNGQSWF RYREDALRNEPMNTREETYDAINKMAASLDDPFTRFLEPEKLRSLRSGTEGSLTGVGLSIGYPGRSEESPAGLVVISTSPGGPAHRAGILSGDVIMEIDD KSTENMGIYDAADRLQGPEGSLVQVTIRSGAEVKHLALTREKVSLNPVKTRLCEIPRSGKDPAKIGYIKLSSFSQNSAGAVKKAVNSFKSDGVNTFVLDL RNNSGGLFPEGIEIAKIWLDKGVIVYVCDSRGVRDIYDTDGTGALVTSDPLTVLVNKGTASASEILAGALKDNKRAVLYGEPTFGKGKIQSVFQLSDGSG LVVTIARYQTPAHIDIDKVGVIPDHPLPNSFPADGDDGLCICLQDPASCNNRNGQLPAM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17740			Peptidase S41 family protein (...		Lus10023704 [exp]	0	1
AT2G17220		Kin3	kinase 3, Protein kinase super...		Lus10001392 [exp]	2.2	0.6836
AT1G29120			Hydrolase-like protein family ...		Lus10013909 [exp]	5.3	0.7440
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	23.1	0.7086
AT5G11960			Protein of unknown function (D...		Lus10004444 [exp]	25.1	0.6824
AT1G33360			ATP-dependent Clp protease (.1...		Lus10040561 [exp]	25.9	0.6821
AT2G31350		GLX2-5	glyoxalase 2-5 (.1.2)		Lus10018625 [exp]	27.5	0.7072
AT5G60580			RING/U-box superfamily protein...		Lus10037410 [exp]	29.3	0.6904
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033078 [exp]	45.1	0.6342
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10017744 [exp]	51.6	0.6420
AT2G05755			Nodulin MtN21 /EamA-like trans...		Lus10035313 [exp]	57.4	0.6515

Compare expression of checked genes

Lus10023704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.