Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16840 361 / 4e-119 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 118 / 5e-30 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 96 / 6e-22 DEA(D/H)-box RNA helicase family protein (.1) AT1G77030 96 / 1e-21 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT5G26742 93 / 7e-21 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT1G71370 92 / 1e-20 DEA(D/H)-box RNA helicase family protein (.1) AT1G16280 92 / 1e-20 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT5G05450 91 / 2e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G22330 89 / 2e-19 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 89 / 2e-19 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004404 [exp] 555 / 0 AT3G16840 874 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031761 [exp] 114 / 1e-28 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031182 [exp] 114 / 2e-28 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10006326 [exp] 99 / 1e-22 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10009838 [exp] 97 / 3e-22 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029596 [exp] 97 / 5e-22 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10001057 [exp] 96 / 1e-21 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10001425 [exp] 92 / 2e-20 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10042754 [exp] 91 / 5e-20 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063600 [exp] 476 / 3e-164 AT3G16840 782 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G084700 [exp] 112 / 9e-28 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.006G249100 [exp] 108 / 2e-26 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 105 / 3e-25 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 101 / 6e-24 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G073100 [exp] 99 / 5e-23 AT5G05450 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G241300 [exp] 97 / 5e-22 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G152400 [exp] 94 / 3e-21 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.005G185900 [exp] 93 / 7e-21 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Potri.005G000500 [exp] 92 / 1e-20 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023706 pacid=23148321 polypeptide=Lus10023706 locus=Lus10023706.g ID=Lus10023706.BGIv1.0 annot-version=v1.0 ATGGCGAGCAAGCTTGCAGAATCATTTATTGAGTGCGCTGAAGAGGATAAAGATGCTTATCTGTATTATTTATTGAGTGTACATGGACAAGGCCGCACTA TTGTGTTCTGTACTTCAATTGCAGCATTGCGTCATATTTCTTCCCTTCTGCGAATCCTTGGAATCAATGTTACGACACTTCATGCTCAGATGCAGCAACG AGCTCGTTTGAAGGCAATTGACCGTTTTCGTTCCAGTGGACATGGCATACTTATTGCCACGGATGTTGCAGCAAGAGGGCTTGATATTCCTGGTGTTCGA ACTGTTATTCATTATCAGCTTCCTCATTCAGCAGAAGTTTACGTTCACAGAAGTGGAAGGACAGCAAGAGCTTCTGCTGATGGTTGCAGTATTGCTCTCG TCTCATCAAAGGACACCTCAAAATGTGCATCACTTTGTAAATCATTTTCTAAGGAAAGCTTTCAACGATTTCCGTTAGACGAGTCCTACATGCCTGAGGT GATGAAACGATTGTCTCTAGCACGTCAAATGGACAAGATTTCACTGAAAGAATCTCAGGAAAAGGCAACAAAATCCTGGTTTGAGCGGAACGCAGAATCA ATTGAGTTGGTTATAGACGAGGATGACAGTGAGGATGAAAGAGTGAAGCATCATAAAGAAAAGAAAGCTACCTCAACTCGGCTAAAAACCCTGCAGCAGG AACTCAATGCACTACTTTCACGTCCATTGCAACCCAAGTCATTCTCAACATCGGTATTTGGCCGGGGCAGAAGTGGAATGGGAGACAACAAGAGAAGGAA AATGGTTGTGATGGGTCAGGATTGCGTAGAACCGCTCCAAGCGCTCCGCAGTGGCGGTCATGAAGTAAGTGTGTTCATCTGGACAAATTTGTATCCTTTG TTGCAATTGGTTCAAGCGTAG
AA sequence Show only first row Show all	>Lus10023706 pacid=23148321 polypeptide=Lus10023706 locus=Lus10023706.g ID=Lus10023706.BGIv1.0 annot-version=v1.0 MASKLAESFIECAEEDKDAYLYYLLSVHGQGRTIVFCTSIAALRHISSLLRILGINVTTLHAQMQQRARLKAIDRFRSSGHGILIATDVAARGLDIPGVR TVIHYQLPHSAEVYVHRSGRTARASADGCSIALVSSKDTSKCASLCKSFSKESFQRFPLDESYMPEVMKRLSLARQMDKISLKESQEKATKSWFERNAES IELVIDEDDSEDERVKHHKEKKATSTRLKTLQQELNALLSRPLQPKSFSTSVFGRGRSGMGDNKRRKMVVMGQDCVEPLQALRSGGHEVSVFIWTNLYPL LQLVQA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16840			P-loop containing nucleoside t...		Lus10023706 [exp]	0	1
					Lus10019215 [exp]	1.0	0.8906
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	3.5	0.8617
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10030522 [exp]	5.5	0.8853
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10023710 [exp]	5.5	0.8688
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Lus10020590 [exp]	6.3	0.8624
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10025556 [exp]	11.3	0.8452
AT5G06400			Pentatricopeptide repeat (PPR)...		Lus10021250 [exp]	11.8	0.8638
AT3G49990			unknown protein		Lus10015447 [exp]	12.2	0.8233
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	14.5	0.8420
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	15.9	0.8513

Compare expression of checked genes

Lus10023706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.