Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33255 337 / 2e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G38740 40 / 0.0007 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004405 [exp] 417 / 1e-150 AT2G33255 356 / 7e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063700 [exp] 352 / 2e-124 AT2G33255 368 / 3e-130 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G043500 [exp] 40 / 0.0008 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10023707 pacid=23148238 polypeptide=Lus10023707 locus=Lus10023707.g ID=Lus10023707.BGIv1.0 annot-version=v1.0 ATGTCCACCGCCACTCTCGCCGCCGGAGCTCGCATCAGAGGCGTCGTCTTCGACATGGACGGAACCCTAACGGTCCCTGCTATTGATTTCTCTGCAATGT ACAAAGCTGTTCTCGGGGAAGGCGAATACCAGAGAATCAGGGCAGAAAATCCTTCCGGTATCGACATTCTTCACCACATCGAGGAGTGGAGCCCCGACCG CCAAAAGAAGGCTTACGAGATCATCGTCGATTACGAGCGCCAGGGGCTCGACCGCCTCCAAATTCTGCCTGGTGCTGTGGAGCTATGTGGGTTTCTGGAT TCGAAGAAAATCAGGAGGGGATTAATCACTCGTAACTTCAAGGAAGCGGTTGATCTTTTTCATTCTCGATTTGGGATGAGTTTTTCTCCAGCATTGAGCA GGGAGTTCCGTCCTTATAAACCCGATCCAGCTCCTCTACTAAACATCTGTTCAACATGGGATGTTCAGCCTGATGAGGTCATAATGGTCGGTGACAGCCT TAAAGATGATGTGGGTTGTGGGAAGCGGGCTGGTGCATTTACATGTTTGCTTGACGAAAAAGAGAGGTATAGTTCTGCTGATTTTGCAGACTTGGATCTC AAACCAGATTTCAAAGTGTCATCCTTAGTTGAAGTTCAGTCAGTGTTGGAGACGAATTTCCACTTGCTGCCATGA
AA sequence Show only first row Show all	>Lus10023707 pacid=23148238 polypeptide=Lus10023707 locus=Lus10023707.g ID=Lus10023707.BGIv1.0 annot-version=v1.0 MSTATLAAGARIRGVVFDMDGTLTVPAIDFSAMYKAVLGEGEYQRIRAENPSGIDILHHIEEWSPDRQKKAYEIIVDYERQGLDRLQILPGAVELCGFLD SKKIRRGLITRNFKEAVDLFHSRFGMSFSPALSREFRPYKPDPAPLLNICSTWDVQPDEVIMVGDSLKDDVGCGKRAGAFTCLLDEKERYSSADFADLDL KPDFKVSSLVEVQSVLETNFHLLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33255			Haloacid dehalogenase-like hyd...		Lus10023707 [exp]	0	1
AT3G18870			Mitochondrial transcription te...		Lus10026325 [exp]	23.8	0.7929
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10027621 [exp]	26.0	0.7355
AT3G29185			Domain of unknown function (DU...		Lus10032999 [exp]	28.9	0.7921
AT5G64460			Phosphoglycerate mutase family...		Lus10007093 [exp]	57.1	0.7552
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10034301 [exp]	61.0	0.7665
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Lus10010280 [exp]	68.2	0.7464
AT1G66930			Protein kinase superfamily pro...		Lus10026759 [exp]	81.3	0.7498
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10019726 [exp]	86.6	0.7362
AT4G31650	B3	REM6	Transcriptional factor B3 fami...		Lus10026265 [exp]	87.1	0.7049
AT5G45275			Major facilitator superfamily ...		Lus10033270 [exp]	99.0	0.6819

Compare expression of checked genes

Lus10023707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.