Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04570 433 / 2e-147 Major facilitator superfamily protein (.1) AT2G33280 287 / 2e-92 Major facilitator superfamily protein (.1) AT1G64890 167 / 3e-46 Major facilitator superfamily protein (.1) AT5G54860 124 / 2e-30 Major facilitator superfamily protein (.1) AT5G25050 94 / 2e-20 Major facilitator superfamily protein (.1) AT1G79710 90 / 6e-19 Major facilitator superfamily protein (.1) AT5G10820 82 / 3e-16 Major facilitator superfamily protein (.1) AT5G25040 69 / 2e-12 Major facilitator superfamily protein (.1.2.3) AT2G32040 68 / 7e-12 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024529 [exp] 199 / 1e-58 AT1G64890 355 / 2e-120 Major facilitator superfamily protein (.1) Lus10004406 [exp] 187 / 3e-57 AT1G04570 108 / 2e-28 Major facilitator superfamily protein (.1) Lus10004407 [exp] 182 / 2e-55 AT2G33280 135 / 7e-39 Major facilitator superfamily protein (.1) Lus10024977 [exp] 174 / 1e-48 AT1G64890 508 / 2e-179 Major facilitator superfamily protein (.1) Lus10037809 [exp] 120 / 4e-29 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10026893 [exp] 94 / 2e-20 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1) Lus10003419 [exp] 93 / 6e-20 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 82 / 2e-16 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10024099 [exp] 80 / 1e-15 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G173600 [exp] 521 / 0 AT1G04570 502 / 6e-174 Major facilitator superfamily protein (.1) Potri.010G063800 [exp] 353 / 4e-116 AT1G04570 523 / 0.0 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 183 / 3e-52 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1) Potri.013G076300 [exp] 180 / 7e-51 AT1G64890 493 / 3e-173 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 132 / 3e-33 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 132 / 5e-33 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 94 / 4e-20 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017400 [exp] 91 / 4e-19 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1) Potri.001G041600 [exp] 88 / 2e-18 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1) Potri.006G265500 [exp] 86 / 1e-17 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03092 [flax] [poplar] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Lus10023708 pacid=23148328 polypeptide=Lus10023708 locus=Lus10023708.g ID=Lus10023708.BGIv1.0 annot-version=v1.0 ATGATTCAATTATTGGTTCCATCGAAGAATCCCATCATAAGGAGGAACCCAGCAGCTGTTTACCCGTCTCGTCCTGTAAAGTTGCAAGCTTTAGGATGGG AACGCCGAATTGCTTGTGTTTACAATGACCAGAATCGTCGCACCACATCAGAACAGCCTAGACTCATTACCAGGGTCTATTCCGAGCCCATTGTGGTTAG CCCCGGTAGAGTTACCGGCCATAACAATGAGAAACGGAGGAGGAGCACCAATGTTAAGGGTGATGGTGGAGAGAAGAAGGCGCGGACGGCAGGAAGTGGT GGCTTCAGCGGCCAATTGGGTTGGGAACAGATGATTATGTTGTGTGGGTTTGGGTGTTGGATGCAAGGATTTAGAGGGTTCCCATGGTTAGGTCTCAACT TCCACATGGCTAACAATCTCAACTTTCATCCTTCTCTACTGCAGCTTGTCCAACATTCTGCTAACCTTCCCATGGTCGCCAAGCCTCTCTTTGGCCTTCT CTCCGATGCTATTTATATTGCTGGAGCTCACAGAATACCCTACATTCAAATTGGAGTTTGTCTACAGGTGTTAGCTTGGGGTTCCTTGGCATTGTTTCCT CCTGCACAGAAAGCCCTTCCTATACTCATGGCATGCATCCTTCTAAGCAACGTTGGTGCTTCGGTCACTGAAGTTGCTACCGACGCTCTTTTTGCTGATT CATCAGTTTCCAAAGAGGAATCTCTCGGTCTGTCACATCAACCTGACCCTGCTGTTGCTGGGAAATCATTATGGAAGAGCATTTCGTATCAGATAAGCAA TCTTAAGATGGCATTAAGCGATGATAGGATTTCTCGTCCCTTGATGTGGATGGTGGCTTCCATTGCCATGGTTCCTGTTCTTTCAGGCTCGGTGTTCTGC TATCAGACTCAATGTTTAAATCTGGACCCTTCAGTCATTGGATTGTCTAAGGTAATTGGCCAGCTGATGCTTCTTTCCATGACCGTTCTCTTTGATCGTT ACTGGAAAGAACTTCCCATGAGAAAACTGGTTGGCACTGTCCAGGTTGTGTATGCTGCTTCACTTCTTCTAGACTTTGTCCTCGTGAGGCAGATCAATGT TAAGATAGGGATTCCCAATGCGTTGTTTTCTCTTTGCTTCTCTGGTTTAGCTGAAACACTCGCGCAGTTTAAACTCCTGCCTTTCTCAGTTTTGCTGGCA AGTTTATGCCCGGAAGGATGTGAAGGATCGCTGACTTCCTTCTTGGCTTCAGCTTTTGTTCTTTCATCCATCATTAGTGGATTTCTTGGTGTTGGATTGG CATCGCTGGTTGGAGTGACATCGACTAACTACTTGCGTCTGCCTGTTGGGATTTTGATACAGTTTCTTCTAGCTTTAATCCCTCTGGCATACATATGCAA TGTACCCATGTCAGAATCTGTTGTCAAGAAGGAAAAAAGGAAAGGTGCAAGTAAAAGAGCCAGGAAAGCCAGAAGGATTGGAAGAGTGATGATCAACTAC ATTTGTGTTTATCGGCGCGAAAGAGACCCTGGCTGGAAGCCTTGA
AA sequence Show only first row Show all	>Lus10023708 pacid=23148328 polypeptide=Lus10023708 locus=Lus10023708.g ID=Lus10023708.BGIv1.0 annot-version=v1.0 MIQLLVPSKNPIIRRNPAAVYPSRPVKLQALGWERRIACVYNDQNRRTTSEQPRLITRVYSEPIVVSPGRVTGHNNEKRRRSTNVKGDGGEKKARTAGSG GFSGQLGWEQMIMLCGFGCWMQGFRGFPWLGLNFHMANNLNFHPSLLQLVQHSANLPMVAKPLFGLLSDAIYIAGAHRIPYIQIGVCLQVLAWGSLALFP PAQKALPILMACILLSNVGASVTEVATDALFADSSVSKEESLGLSHQPDPAVAGKSLWKSISYQISNLKMALSDDRISRPLMWMVASIAMVPVLSGSVFC YQTQCLNLDPSVIGLSKVIGQLMLLSMTVLFDRYWKELPMRKLVGTVQVVYAASLLLDFVLVRQINVKIGIPNALFSLCFSGLAETLAQFKLLPFSVLLA SLCPEGCEGSLTSFLASAFVLSSIISGFLGVGLASLVGVTSTNYLRLPVGILIQFLLALIPLAYICNVPMSESVVKKEKRKGASKRARKARRIGRVMINY ICVYRRERDPGWKP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04570			Major facilitator superfamily ...		Lus10023708 [exp]	0	1
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	7.5	0.8304
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	9.4	0.8163
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025276 [exp]	12.5	0.7916
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025354 [exp]	13.0	0.8048
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10024407 [exp]	14.1	0.8003
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10013191 [exp]	16.1	0.8043
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10016738 [exp]	20.0	0.7549
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10036874 [exp]	27.7	0.7612
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027303 [exp]	28.0	0.7825
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10036776 [exp]	29.0	0.7557

Compare expression of checked genes

Lus10023708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.