Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25120 219 / 1e-66 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G25140 209 / 1e-62 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26210 208 / 2e-62 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT5G25130 208 / 3e-62 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT5G25180 206 / 8e-62 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT3G26330 206 / 1e-61 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G48280 206 / 1e-61 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48300 201 / 1e-59 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT5G24960 200 / 3e-59 CYP71A14 "cytochrome P450, family 71, subfamily A, polypeptide 14", cytochrome P450, family 71, subfamily A, polypeptide 14 (.1) AT3G26320 198 / 1e-58 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002885 [exp] 450 / 5e-156 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10042419 [exp] 381 / 2e-130 AT3G48280 343 / 3e-114 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10018263 [exp] 372 / 2e-125 AT5G25140 393 / 5e-132 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) Lus10026252 [exp] 375 / 4e-122 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10030708 [exp] 318 / 8e-105 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10012767 [exp] 314 / 5e-103 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10013194 [exp] 310 / 3e-101 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10027427 [exp] 304 / 3e-101 AT3G26270 266 / 4e-85 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) Lus10028926 [exp] 299 / 9e-97 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075000 [exp] 305 / 9e-100 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 304 / 3e-99 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 302 / 2e-98 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364900 [exp] 293 / 2e-97 AT3G26300 228 / 1e-70 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 295 / 6e-96 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 293 / 9e-95 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 288 / 6e-93 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365300 [exp] 284 / 2e-92 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 282 / 9e-91 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.011G130850 [exp] 277 / 7e-89 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10023709 pacid=23148395 polypeptide=Lus10023709 locus=Lus10023709.g ID=Lus10023709.BGIv1.0 annot-version=v1.0 ATGGAAGCTCCCAATGCTAGGCAATCTCCACCAGCTCGTCGGCGACTTAAGGATTTGGCACATAAATACGGTCCTGATGTGATGCATATGCTCATTTCCT CACCTGAAGCTGCTAACAGGGAAGAGGAAGTATCCAACCTCATTCAACTTCTTTGTCAGAAAGCAGAAGCTGGGAAGCCAGTGAATCTGACTTCCATGAT GTCAACGCTTAATAGTTGTATCATATCCAGGGCAGCATTCGGTAAAGTACAAGAGCTAGGCGGCGATTTCATGTTGGTTGTGGATAACATATCGGATGCT ACATCAAGTTTCAAAATTTCTCACCTCTATCCATCCCTCAAGTTACTTCCGTATCTGAGTGGGTTCAAAGCAAAGCTAGAGAGGATGCATAAAGCATCAG ATTCGATACTTGAGCAGATTATCAATGAACATAAATCTGAAAGAAGGCTGAGAGTTAGCACTCAAGATCATGATGATGTCAATGAAGATATTGTTGATGT CTTTCTGAATCTTCAGGAAAACCACAACCTCGGAGTCCATATAACAATGGACGAAATGTTCATTGCGAGTATTGAGACATCATCCACACCAATAGAATGG GCTTTGTCAGAGATGATCAGACATCCGAAATGGTTGACTATAGCTCAAGAAGAGGTTAGAAAAGTCTTCAATGAAATCGGAAATGTCAAAGAAGCAGGCC TTGATCAATTAAAGTACTTGGACATGGTTATTGCTGAGACTTTAAGATTGCACCCTCCCGTTCCTTTACTTCTTCCAAGAGAAACTAGAGAGAAAGTGGT GCTCAATGGTTTTGATATCCCAACCAAAACTAGAGTGATTGTCAATGCTTGGGCGATTAATCGAGATTCTCTTCATTGGACAGATGCTGAGAAATTCTTT CCTGAAAGATTCATAGATTGCTCAACAGACTACAAAGGAACTAATTTTCATTTCATTCCATTCGGTGCTGGAAGGAGGATGTGCCCTGGAATGTTGTTTG GAATGACCACCGTTAAGCTTACTCTCGCTAGTTTGCTCTTCCATTTTGATTGGAAGCTTCCTGCTGAAATGAAACCAGAAAGTTTTGATATGGCAGAAGC TTTTGGGACATCTCTCAGAAGAAAATACACACTGCATCTCGTACCTGTTCCATACAATAACATGTCTTGA
AA sequence Show only first row Show all	>Lus10023709 pacid=23148395 polypeptide=Lus10023709 locus=Lus10023709.g ID=Lus10023709.BGIv1.0 annot-version=v1.0 MEAPNARQSPPARRRLKDLAHKYGPDVMHMLISSPEAANREEEVSNLIQLLCQKAEAGKPVNLTSMMSTLNSCIISRAAFGKVQELGGDFMLVVDNISDA TSSFKISHLYPSLKLLPYLSGFKAKLERMHKASDSILEQIINEHKSERRLRVSTQDHDDVNEDIVDVFLNLQENHNLGVHITMDEMFIASIETSSTPIEW ALSEMIRHPKWLTIAQEEVRKVFNEIGNVKEAGLDQLKYLDMVIAETLRLHPPVPLLLPRETREKVVLNGFDIPTKTRVIVNAWAINRDSLHWTDAEKFF PERFIDCSTDYKGTNFHFIPFGAGRRMCPGMLFGMTTVKLTLASLLFHFDWKLPAEMKPESFDMAEAFGTSLRRKYTLHLVPVPYNNMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10023709 [exp]	0	1
					Lus10011613 [exp]	1.0	0.7895
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10003813 [exp]	22.8	0.7413
AT5G01750			Protein of unknown function (D...		Lus10020780 [exp]	23.5	0.6062
AT2G04220			Plant protein of unknown funct...		Lus10032896 [exp]	29.6	0.7074
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10041597 [exp]	31.2	0.6972
AT5G19120			Eukaryotic aspartyl protease f...		Lus10041004 [exp]	34.5	0.6217
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10029947 [exp]	35.3	0.7025
AT4G19645			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10036199 [exp]	43.3	0.6410
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10015095 [exp]	46.9	0.6139
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10024151 [exp]	49.6	0.6961

Compare expression of checked genes

Lus10023709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.