Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18750 386 / 2e-123 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 376 / 1e-121 MEF22 mitochondrial editing factor 22 (.1) AT3G23330 376 / 3e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 360 / 1e-114 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 354 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 348 / 5e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 352 / 2e-110 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G13230 345 / 3e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 344 / 1e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G40720 343 / 2e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017446 [exp] 372 / 2e-118 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 360 / 3e-114 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10014452 [exp] 344 / 1e-113 AT4G39530 150 / 3e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 359 / 2e-112 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 357 / 5e-112 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009913 [exp] 355 / 2e-110 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006123 [exp] 347 / 2e-110 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 351 / 3e-110 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 350 / 3e-109 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063900 [exp] 793 / 0 AT3G12770 385 / 7e-125 mitochondrial editing factor 22 (.1) Potri.008G173500 [exp] 578 / 0 AT3G12770 261 / 4e-79 mitochondrial editing factor 22 (.1) Potri.004G059400 [exp] 387 / 9e-124 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 375 / 3e-121 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 364 / 3e-115 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 362 / 4e-115 AT3G22690 582 / 0.0 unknown protein Potri.013G152000 [exp] 358 / 3e-114 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.006G090900 [exp] 351 / 7e-112 AT3G14730 650 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 357 / 4e-111 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 350 / 2e-110 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10023710 pacid=23148279 polypeptide=Lus10023710 locus=Lus10023710.g ID=Lus10023710.BGIv1.0 annot-version=v1.0 ATGAACTTCTTCCGGCCGCTGAAGAGCTGTACCATTCGTTTCACAAGTCGCTCTTACCATTCCGCCGACGACAGCCTCTTCCCGTCGCAAGTGCTTCTGA ATTTACTTGACTCTGCTAATCGTCTTAAATCCCTTCACTTGATTCGACAGTGTCATCATCGGATTTCCTCTCTAGGGCTCACACAAAACCCTTTCTTGGC AACTAAACTCATCTCTGCGTATGCCAATTGTGGCCTCCCAAATGAGTCGCAGCTCGTTTTTGATTCACTCCTCGACAGGACCGAGTTCATCTGGAACGCA CTTATCAACGGGTACGTGAAAAATCGAGCTTATGAACAGTCTTTTGGTTTGTTTTGCGTGATGTGTCGTGGTTCTGTGGTCCCTGATGCTTATACCCTGG CAACGATGTCCAAAGCATATGGGGAACATGGGGAGTTAAGTTCCGGGAGAATGATTCATGGGAAGATTATTAAAGCTGGGTTTATGTGGGATACTGTGGT TGCTAATTCTCTTATGTCGATGTACAGCAAATGTAAGTGGTTTGGAGAATGCTTGAAAGTGTTCGATGAAATGCCCCTAAGAAGTGTGGGTTCTTGGAAT GTGGTTATTTCTGGGTATGCAGGCTTAGGAGATGGTACTTTTGTGAAGGAGATGTCTAAATTTGTAAAAGATATGGAGAATGATGGGTTGAAGCCTGATG CATTTACAGTGTCTAGTCTTCTGCCTTTGTGCTATGATGTTACCTACAGCCTGGATTATGGAAGAGAACTTCATGGCTATATATTAAGGAATGAATTGGG TAATGCAATGGGCTCGGATCTTCATCTGGCTTGTTGCTTAGTTGACATGTATGCAAGGAGCAATAGAGTTGGTGTAGGGAGAAGGGTGTTTGACCAAATG AAATACAGAAGCGTTCATGCTTGGACTGCAATGATTAATGGTTATATGTTAACTGAAAAGTTTGAAGAAGCACTAAATCTCTTGCGTCAAATGCAGATCC GAGATAGAGTAGAGCCTAATAGTGTAACGCTTTTGAGTGTTCTTCCAGCTTGTAGCTCACTAGTTGGTTCACTTTTTGGGAGACAAGTTCACGGATATTC AGTCAGAAAAGGATTGAATTCTGAAGTTGCTTTAGGAAATGCTTTGATTGACATGTACTCGAAATGTGGCAACTTAAATTATGCAAGACAAGTCTTTGAA GATGTTTCTTTTACTAAAGATGCAATCTCTTGGAGCTCGATGATTTCTGGTTACGGATTACATGGGAAAGGTGAGGAAGCCATATGTGTATATAATCATA TGCTTCATCAAGGGTCTAAACCAGATACGATAACAGTAGTTGGCGTTCTTTCTGCTTGTGGGAGGTCAGGTTTGGTAAATGAGGGCCTTAATCTCTATCA TTCTGCTGTATACAAGCACGGGATGAAGCCAACAGTTGAGGTCTGTGCTTGTGTGGTGGATATGTTGGGAAGATCGGGCCAGCTTGGTGAAGCATTAGAC TTCATCAAAGCAATGCCAGTAGAACCTAGTCCAAGCGTCTGGGGAGCTCTTGTCAGTGCTTCCACAATGCATGGAAATTACCAGATGCAAGATCTAGCAT ACAGGTGCCTTGCACATTTGGAACCTGAAAACCCGTCAAATTATATATCCCTTTCTAATTTACATGCTTCTTCTAAAAGATGGCATGATGTTGCTGCCGT AAGAAGAAGGATGAAAGAAAGGGGAATACAGAAAACTCCAGGTTGCAGTTGGATAAGCCTCAACAACAGAACCCATAGTTTCTTTGTCGCTGATAAGGTT CATCCCTCTAGAGAACCAATACATGAGATGCTGAAAAGCCTTATCATGGTGATGAAAGAAGCTCCTGATTCTCCAACTCTGGAAGCTGTTACATAG
AA sequence Show only first row Show all	>Lus10023710 pacid=23148279 polypeptide=Lus10023710 locus=Lus10023710.g ID=Lus10023710.BGIv1.0 annot-version=v1.0 MNFFRPLKSCTIRFTSRSYHSADDSLFPSQVLLNLLDSANRLKSLHLIRQCHHRISSLGLTQNPFLATKLISAYANCGLPNESQLVFDSLLDRTEFIWNA LINGYVKNRAYEQSFGLFCVMCRGSVVPDAYTLATMSKAYGEHGELSSGRMIHGKIIKAGFMWDTVVANSLMSMYSKCKWFGECLKVFDEMPLRSVGSWN VVISGYAGLGDGTFVKEMSKFVKDMENDGLKPDAFTVSSLLPLCYDVTYSLDYGRELHGYILRNELGNAMGSDLHLACCLVDMYARSNRVGVGRRVFDQM KYRSVHAWTAMINGYMLTEKFEEALNLLRQMQIRDRVEPNSVTLLSVLPACSSLVGSLFGRQVHGYSVRKGLNSEVALGNALIDMYSKCGNLNYARQVFE DVSFTKDAISWSSMISGYGLHGKGEEAICVYNHMLHQGSKPDTITVVGVLSACGRSGLVNEGLNLYHSAVYKHGMKPTVEVCACVVDMLGRSGQLGEALD FIKAMPVEPSPSVWGALVSASTMHGNYQMQDLAYRCLAHLEPENPSNYISLSNLHASSKRWHDVAAVRRRMKERGIQKTPGCSWISLNNRTHSFFVADKV HPSREPIHEMLKSLIMVMKEAPDSPTLEAVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10023710 [exp]	0	1
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10030522 [exp]	1.0	0.9122
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	1.4	0.9115
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10032172 [exp]	3.6	0.8621
AT3G16840			P-loop containing nucleoside t...		Lus10023706 [exp]	5.5	0.8688
AT5G06400			Pentatricopeptide repeat (PPR)...		Lus10021250 [exp]	5.7	0.8892
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	6.0	0.8798
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10012890 [exp]	6.3	0.8779
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	9.2	0.8546
AT5G52820			WD-40 repeat family protein / ...		Lus10039597 [exp]	9.9	0.8647
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	15.3	0.8568

Compare expression of checked genes

Lus10023710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.