Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04560 228 / 6e-77 AWPM-19-like family protein (.1) AT5G46530 95 / 7e-25 AWPM-19-like family protein (.1) AT1G29520 93 / 3e-24 AWPM-19-like family protein (.1) AT5G18970 70 / 3e-15 AWPM-19-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014456 [exp] 320 / 2e-113 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10017578 [exp] 117 / 1e-33 AT1G04560 148 / 1e-45 AWPM-19-like family protein (.1) Lus10011973 [exp] 107 / 1e-29 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10004587 [exp] 106 / 3e-29 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10025374 [exp] 103 / 2e-28 AT5G46530 241 / 4e-83 AWPM-19-like family protein (.1) Lus10015255 [exp] 103 / 3e-28 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10033541 [exp] 65 / 2e-13 AT1G04560 91 / 2e-23 AWPM-19-like family protein (.1) Lus10001116 [exp] 60 / 2e-11 AT5G18970 216 / 1e-72 AWPM-19-like family protein (.1) Lus10041238 [exp] 54 / 2e-09 AT5G18970 225 / 2e-76 AWPM-19-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064200 [exp] 254 / 2e-87 AT1G04560 214 / 2e-71 AWPM-19-like family protein (.1) Potri.017G113000 [exp] 161 / 8e-51 AT1G04560 155 / 2e-48 AWPM-19-like family protein (.1) Potri.011G077800 [exp] 102 / 9e-28 AT5G46530 164 / 2e-52 AWPM-19-like family protein (.1) Potri.001G354500 [exp] 98 / 4e-26 AT1G29520 194 / 3e-64 AWPM-19-like family protein (.1) Potri.008G200000 [exp] 52 / 1e-08 AT5G18970 216 / 1e-72 AWPM-19-like family protein (.1) Potri.008G200300 [exp] 51 / 2e-08 AT5G18970 186 / 4e-61 AWPM-19-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05512 [flax] [poplar] AWPM-19 AWPM-19-like family
Representative CDS sequence Show only first row Show all	>Lus10023713 pacid=23148250 polypeptide=Lus10023713 locus=Lus10023713.g ID=Lus10023713.BGIv1.0 annot-version=v1.0 ATGGCACAATCGACAGTTGGAAGGAACTTGGCAGCACCGTTGCTGTTCCTGAACTTCATAATGTATGCAATCGTGTTGGGTTTCGCAAGTTGGTGCTTGA ATAGGTACATCAACGGCCAGACTTACCATCCCAGTTTTGGAGGGAATGGGGCAACGGGGTTCTTCCTGACGTTTGCAACACTAGCCGGAGTGCTGGGGAT AGTTTCGAAGTTCGTGGGTGGGAACCACATAAGGACATGGAGGAACGACAGTCTAGCAGCCGCAGCTTCAACTGCGATCCTAGCTTGGGCGGTGACTGCG TTAGCCTTTGGGTTGGCTTGCAAGCAGATAAACATAGGAGGGCATAGAGGATGGAGGCTGAGGGTGTTGGAGGCGTTCATAATCATATTGGGGATAACGC AACTGCTGTACGTGTTGCTGCTCCACGCAGGGATGTTCAGCAGCAGGTACGGTCCAGGGTATAGGGACCCTGACTATGGCGTAGGAGCTGGTTCCGAGAT GCCCAAGGGTACTGCTGGTGTTGGCATGACTGGAGCAAGGGTTTAA
AA sequence Show only first row Show all	>Lus10023713 pacid=23148250 polypeptide=Lus10023713 locus=Lus10023713.g ID=Lus10023713.BGIv1.0 annot-version=v1.0 MAQSTVGRNLAAPLLFLNFIMYAIVLGFASWCLNRYINGQTYHPSFGGNGATGFFLTFATLAGVLGIVSKFVGGNHIRTWRNDSLAAAASTAILAWAVTA LAFGLACKQINIGGHRGWRLRVLEAFIIILGITQLLYVLLLHAGMFSSRYGPGYRDPDYGVGAGSEMPKGTAGVGMTGARV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04560			AWPM-19-like family protein (....		Lus10023713 [exp]	0	1
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	10.4	0.7948
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10015786 [exp]	13.8	0.7768
AT3G07090			PPPDE putative thiol peptidase...		Lus10038168 [exp]	15.8	0.7879
AT3G63095			Tetratricopeptide repeat (TPR)...		Lus10028014 [exp]	23.9	0.6240
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	25.9	0.7771
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10004336 [exp]	28.2	0.7775
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10035519 [exp]	28.8	0.7693
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027779 [exp]	41.7	0.7686
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031730 [exp]	43.5	0.7653
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10004340 [exp]	48.0	0.7322

Compare expression of checked genes

Lus10023713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.