Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13460 726 / 0 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 702 / 0 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT5G04940 309 / 7e-96 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 291 / 6e-89 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT2G35160 293 / 7e-89 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 291 / 8e-88 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G13960 270 / 1e-81 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT1G17770 243 / 7e-71 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 233 / 1e-66 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT5G47150 111 / 1e-26 YDG/SRA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014457 [exp] 795 / 0 AT2G33290 444 / 2e-149 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) Lus10029470 [exp] 313 / 3e-97 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008681 [exp] 306 / 1e-94 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10026137 [exp] 300 / 2e-92 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10011011 [exp] 301 / 1e-89 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 279 / 2e-83 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 283 / 3e-83 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10031984 [exp] 272 / 2e-81 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 270 / 4e-81 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064300 [exp] 881 / 0 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.008G173100 [exp] 875 / 0 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.001G036800 [exp] 321 / 3e-100 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.016G025300 [exp] 317 / 9e-99 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.003G188700 [exp] 317 / 1e-98 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.006G027600 [exp] 315 / 2e-98 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.003G083100 [exp] 318 / 1e-96 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.002G237950 [exp] 264 / 1e-78 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 242 / 1e-70 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 223 / 7e-63 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10023714 pacid=23148282 polypeptide=Lus10023714 locus=Lus10023714.g ID=Lus10023714.BGIv1.0 annot-version=v1.0 ATGAAGGTACCCAAAATCGAACCAAAGCTGGAACCACTGGAGGAGAGCCCACTCGAAATCCAGCAGCTCCTTCAAGAGCAACCGGACTCTTACTTCCAAG ACTCAATCCCTTTGAACTTCTACTCCGATTCCCAAAGTACAACTCCATCTCAATCCGCCCTTGTCCCCGCCGCAGACAATAATGTCTATTCCGAGTACTG CCGAATCTCGGAGCTCTTCCGGACAGCTTTTGCCAAACGGGTAGAGGAGGAGCAACAGCAGCAGCAGCAGCAGCAGAATCAACAGTACGGAGACGCCTCG GCTCCGGACCCAGACGCTCAAGCGATTGTGCCCATCAACACTGATAACCAGGTGACTTCCACTCCGCCCCCCAAGGTTCAGCGGAAGTACCCGAAGCGAT CATCGGAGCTTGTCCGGGTCACGGACCTTCAGATTGAGGATAAGAGGTATTTCAGGGACCTGGTCCGGAGCACTCGTTTGGTGTTCGACTCGTTTCGAAT ATACGCTGTGGAGGCGGAAGCGAAGCGTCGAAACGCATTGGCAGCCTTGTTCAGAAAGCCTCGTGGGGATCTACTGGCTGCGTCCGTTATGAGGGACCGT GATCTTTGGATCAATCGTGATAAGCGAATTGTGGGTTCTATTCCTGGTATCGAGATCGGAGATGTCTTTTTCTTCAGGATGGAATTGTGTGTGCTTGGGG TTCATGGCCAACCTCAGGCTGGAATTGACTACCTCCCTGGGAGCCAAAGCTCAAATGGGCAGCCAATTGCTACGGGTATTATTGTTTCTGGTGGCTACGA GGACGATGAGGACGCTGGAGATGAGATAACTTATACTGGGCATGGAGGCCAGGATAAGTTTGGGAAGCATTGTGTAAATCAAAAGCTTGAAGGTGGGAAC TTAGCGATGGAGAGGAGCATGCATTATGGAATTGAAGTAAGGGTTGTTAGAGGGTTTAAGTATGAAGGGAGTATTAGTAGCAAGATTTATGTCTATGATG GTTTATACAGGATTTACCAGTACTGGTTTGATATAGGTAAATCTGGTTTTGGTGTCTATAAGTTTAAGCTGTCTAGGATAGAAGGACAGGAGCAAATGGG TAGTGCCATCCTCAAACTTGCTGGGAGTTTGCGGACTAAGCCATTGAGCGTGAGGCCAACTGGGTATTTACGACTTGATCTCTCAAAAGGATTAGAACAT ATGCCTGTCATGGTGTTCAACGATATTGATAACTTTGGCGATCCTGTTTATCATGACTATCTTGCGAAGACTGTCTTTCCTCCTCACTTGTGTAACCCTG GAAGTAGTGGAACTGGTTGCGAATGTGTTTCGGGTTGCGTGGATGGCTGTTTTTGCGCAATGAAGAATGGTGGTGAGTTGGCTTATGATCAATATGGATT CCTGATAAGGGGAAAGCCCTTGATATTTGAATGTGGACTCTTTTGTAAATGTCCACCAAGTTGCCGTAACCGTGTAAGTCAGAGGGGATTGAGATACCGA ATGGAAATCTTTAGGTCCATGCAAACTGGTTGGGGAGTCAGGTCACTGGATTTGATACATGCTGGTTCGTTTATATGCGAGTATGCTGGTGTTGCGCTCA CGAGAGAGCAAGCTGAGATTTTTGCAATGAATGGTGATACATTGATTTATCCCAGTCGGTTTACAAGTAGATGGGCAGAATGGGGAGACTTATCTCGGAT ATATCCCGATTATGTGCGCCCAACATATCCCTCTCTTCCGCCTTTGGATTTTGCAATGGATGTATCTAGAATGAGGAATGTTGCTTGTTACATGAGCCAT AGCACTGCTCCTAATGCGATGGTGCAGTTTGTACTGTATGATCATAACAATCTGATGTTCCCCCACCTTATGATATTTGCTATTGAGAACATTCCTCCTT TGCGGGAGATAAGTCTCGACTATGGGATAGCAGATGATGCAACCGCTAAGCTTGCCATTTGCAATTGA
AA sequence Show only first row Show all	>Lus10023714 pacid=23148282 polypeptide=Lus10023714 locus=Lus10023714.g ID=Lus10023714.BGIv1.0 annot-version=v1.0 MKVPKIEPKLEPLEESPLEIQQLLQEQPDSYFQDSIPLNFYSDSQSTTPSQSALVPAADNNVYSEYCRISELFRTAFAKRVEEEQQQQQQQQNQQYGDAS APDPDAQAIVPINTDNQVTSTPPPKVQRKYPKRSSELVRVTDLQIEDKRYFRDLVRSTRLVFDSFRIYAVEAEAKRRNALAALFRKPRGDLLAASVMRDR DLWINRDKRIVGSIPGIEIGDVFFFRMELCVLGVHGQPQAGIDYLPGSQSSNGQPIATGIIVSGGYEDDEDAGDEITYTGHGGQDKFGKHCVNQKLEGGN LAMERSMHYGIEVRVVRGFKYEGSISSKIYVYDGLYRIYQYWFDIGKSGFGVYKFKLSRIEGQEQMGSAILKLAGSLRTKPLSVRPTGYLRLDLSKGLEH MPVMVFNDIDNFGDPVYHDYLAKTVFPPHLCNPGSSGTGCECVSGCVDGCFCAMKNGGELAYDQYGFLIRGKPLIFECGLFCKCPPSCRNRVSQRGLRYR MEIFRSMQTGWGVRSLDLIHAGSFICEYAGVALTREQAEIFAMNGDTLIYPSRFTSRWAEWGDLSRIYPDYVRPTYPSLPPLDFAMDVSRMRNVACYMSH STAPNAMVQFVLYDHNNLMFPHLMIFAIENIPPLREISLDYGIADDATAKLAICN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Lus10023714 [exp]	0	1
AT2G33290		SDG3, ATSUVH2, ...	SET DOMAIN-CONTAINING PROTEIN ...		Lus10014457 [exp]	1.0	0.9137
AT5G57460			unknown protein		Lus10004736 [exp]	2.4	0.8926
AT1G35660			unknown protein		Lus10006047 [exp]	2.8	0.8819
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10011379 [exp]	5.8	0.8363
AT1G79090			unknown protein		Lus10031788 [exp]	7.1	0.8698
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	8.7	0.8853
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10025650 [exp]	9.9	0.8433
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	13.0	0.8686
AT2G32450			Calcium-binding tetratricopept...		Lus10033182 [exp]	13.4	0.8660
AT3G19870			unknown protein		Lus10012903 [exp]	16.4	0.8629

Compare expression of checked genes

Lus10023714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.