Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04555 130 / 1e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014458 [exp] 231 / 3e-79 AT1G04555 168 / 3e-54 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G173000 [exp] 149 / 2e-46 AT1G04555 174 / 8e-56 unknown protein Potri.010G064500 [exp] 141 / 1e-43 AT1G04555 158 / 2e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023715 pacid=23148271 polypeptide=Lus10023715 locus=Lus10023715.g ID=Lus10023715.BGIv1.0 annot-version=v1.0 ATGGATATACAGCAGCCATGGCGGACGAGATTATCGTTTAAGAGCGCCACCATCTTACTCACTGTGCTTAATGTCGTCACTGTCCTTTTCTTGCTACAGG GCTTTCTCTACGGTGCTTCTCCCCGCATCCGATCCTCTTCTTCTAACCAATTCGCTCCAGTTCAACTAAGATACATCAAGGAATCTGAAGAGATCCGCCT TGCCATGCAACCTTGGGACCTTATAAGAAGGGTGAAAGAAATTCAGCAAGAATCTTTTGCAAAACCTCAAACAGTTCAGCAGAGAGAGACCACGACACAA ACAGCAGCTGTTGATCTTTCGAAAAGGCTAAAGGATCTCCGCACTCTCAATGACGCTGCTAGCACGAAAGCTTTAGAAGAATGGCGGAAGAGGAAGATCG AGCGAGCAAGACAGCGGGAAATGGAGAAAAATGGTACTGTCACCTCTCAAGTTTAG
AA sequence Show only first row Show all	>Lus10023715 pacid=23148271 polypeptide=Lus10023715 locus=Lus10023715.g ID=Lus10023715.BGIv1.0 annot-version=v1.0 MDIQQPWRTRLSFKSATILLTVLNVVTVLFLLQGFLYGASPRIRSSSSNQFAPVQLRYIKESEEIRLAMQPWDLIRRVKEIQQESFAKPQTVQQRETTTQ TAAVDLSKRLKDLRTLNDAASTKALEEWRKRKIERARQREMEKNGTVTSQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04555			unknown protein		Lus10023715 [exp]	0	1
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	1.4	0.9274
AT1G03950		VPS2.3	vacuolar protein sorting-assoc...		Lus10033914 [exp]	2.2	0.9290
AT5G01800			saposin B domain-containing pr...		Lus10022750 [exp]	2.6	0.9164
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10026817 [exp]	3.2	0.9197
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	3.5	0.9192
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	5.3	0.9259
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	7.1	0.8985
AT1G04555			unknown protein		Lus10014458 [exp]	7.3	0.9267
AT2G42780			unknown protein		Lus10031380 [exp]	8.1	0.8947
AT5G03905			Iron-sulphur cluster biosynthe...		Lus10014201 [exp]	8.8	0.8819

Compare expression of checked genes

Lus10023715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.