Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24315 367 / 2e-128 ATSEC20 Sec20 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014460 [exp] 565 / 0 AT3G24315 393 / 8e-139 Sec20 family protein (.1) Lus10014461 [exp] 233 / 8e-78 AT3G24315 169 / 4e-53 Sec20 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064900 [exp] 395 / 2e-139 AT3G24315 249 / 8e-82 Sec20 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF03908 [flax] [poplar] Sec20 Sec20
Representative CDS sequence Show only first row Show all	>Lus10023717 pacid=23148239 polypeptide=Lus10023717 locus=Lus10023717.g ID=Lus10023717.BGIv1.0 annot-version=v1.0 ATGGACGAGGTGGTGGAAGCAGTAGAGAGGGCGAAGCAGGAATGGGACGAAGCGTATGATTCCACGCAAGTCCACATTAAATCGATTCAAGAGTACGGCA AATCCAGAGATGATGGTGATGGACAGGGAAAGAATTCCCTTCCCAGATTGAATGGTCTTGCGCAAGATGGATTAGCTCTCCTCCAATCGCTGGAATTCAA GCTTGATCTCTTGGCTCCCCAGTTGCCCACTGATGATCAAGTTAAATCGACACAGTCGCTGTTCGAATCCTGGAAGAAACAGTCTCACAGTTTGAGGCTG AGTTTGAGGAACGCTAATTTGCAAGCTAAGGCTAATATGAGGAAGGCTGCACAGGAAGAGAGAGAACTGCTTTTAGGAGGCGGGGAAGAATCCACAGTTC GCAGGAGAAATCTTCAGACGAAGGCTGGGATGACATCTGCAGCAGAAAGCATCACAGAGAGCCTCAGACGTACTCGACAGCTGATGGTTCAGGAAGTGGA AAGGAGTGCTAACACACTTATGACTTTCGACGAATCAACGGGGGTATTAAGAAAGGCTGAAAGTGAATATAAGGGTCATCGATCATTGTTGATGCGAACA CGAAACCTATTATCCACAATGCAAAGACAGGATGTTATTGACAGGGTGATAATTGCAGTTGGGTTTATCTTGTTCTCTTGTGCTGTTCTGTATGTGGTGT CCAAGCGTGTCGGCATACTTAGGCTACAGAGAACGGTGACTGCTGCAATTAGGGCTGGCATGGCTGGGAAAGGGGACTTCAGACGTGAAGCAGTTGAAGA TGGTCTAAAAAATCTAGCTCAAACGCACAAAAATCCAGATGCGCAAATGCAGGCACTGCTTAAGCAGCCCATGCACGACGAGCTGTAG
AA sequence Show only first row Show all	>Lus10023717 pacid=23148239 polypeptide=Lus10023717 locus=Lus10023717.g ID=Lus10023717.BGIv1.0 annot-version=v1.0 MDEVVEAVERAKQEWDEAYDSTQVHIKSIQEYGKSRDDGDGQGKNSLPRLNGLAQDGLALLQSLEFKLDLLAPQLPTDDQVKSTQSLFESWKKQSHSLRL SLRNANLQAKANMRKAAQEERELLLGGGEESTVRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERSANTLMTFDESTGVLRKAESEYKGHRSLLMRT RNLLSTMQRQDVIDRVIIAVGFILFSCAVLYVVSKRVGILRLQRTVTAAIRAGMAGKGDFRREAVEDGLKNLAQTHKNPDAQMQALLKQPMHDEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10023717 [exp]	0	1
AT5G03460			unknown protein		Lus10014419 [exp]	1.0	0.9403
AT5G35080			unknown protein		Lus10039972 [exp]	1.4	0.9189
AT3G20920			translocation protein-related ...		Lus10009945 [exp]	2.4	0.8997
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10032636 [exp]	2.4	0.9153
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10016143 [exp]	4.5	0.9021
AT1G65020			unknown protein		Lus10024543 [exp]	5.3	0.8975
AT4G25670			unknown protein		Lus10039276 [exp]	6.0	0.9042
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	7.5	0.8972
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	7.9	0.8947
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10031101 [exp]	9.2	0.8759

Compare expression of checked genes

Lus10023717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.